Co-expression analysis

Gene ID	TaAffx.109010.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g69700: ATHVA22C (HF=9e-1)
Module size	6 genes
NF	0.57
%ile	83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.92	TaAffx.109010.1.S1_at	CA681284	-	-	9e-1	At1g69700	ATHVA22C	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.93	Ta.20735.3.A1_at	CA641104	-	-	1e+0	At1g67590	remorin family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.94	Ta.7894.3.A1_at	CA680072	-	-	4e+0	At3g51300	ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	Ta.9049.2.A1_at	CA606630	-	-	3e-1	At2g19480	NAP1	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.24767.3.S1_at	CA737843	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.80659.1.S1_at	CA694256	-	-	1e+0	At2g47320	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
65.6	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.9	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.4	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.4	99.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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