Co-expression analysis

Gene ID TaAffx.108876.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g05350: zinc finger (C3HC4-type RING finger) family protein (HF=2e+0)
Module size 7 genes
NF 0.48
%ile 73.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.40.95TaAffx.108876.1.S1_atCA684367--2e+0At4g05350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6786.30.96TaAffx.54536.1.S1_x_atCA680299--2e-1At2g38340AP2 domain-containing transcription factor, putative (DRE2B)O.I.H.G.S.X.
0.5678.60.95Ta.22731.3.S1_atCA697465--2e+1At4g17440unknown proteinO.I.H.G.S.X.
0.5072.40.95TaAffx.110040.1.S1_atCA664997--4e+0At5g05830zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4464.50.95Ta.3564.3.S1_x_atCA699601--3e-2At4g16770iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.3651.90.96TaAffx.105929.1.S1_atBJ226774--4e+0At5g19875unknown proteinO.I.H.G.S.X.
0.2735.60.95Ta.29509.2.S1_x_atCA698053--2e-5At1g63960unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.699.8GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
16.099.6GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
8.398.8GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.998.7GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.798.7GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.598.6GSM324490Si+ B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
6.398.2GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM324489Si- B+ rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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