Co-expression analysis

Gene ID TaAffx.108778.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g67660: DNA binding / nuclease (HF=3e+0)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98TaAffx.108778.1.S1_atCA684195--3e+0At1g67660DNA binding / nucleaseO.I.H.G.S.X.
0.4058.40.99TaAffx.26702.1.S1_atCA685994--3e-1At1g30900vacuolar sorting receptor, putativeO.I.H.G.S.X.
0.2532.10.99TaAffx.108631.1.S1_atCA686048--3e-1At4g1500060S ribosomal protein L27 (RPL27C)O.I.H.G.S.X.
0.1922.40.99TaAffx.81595.1.S1_atCA684192--1e+0At5g61610-O.I.H.G.S.X.
0.078.60.99TaAffx.108373.1.S1_atCA689084--4e+0At5g62020AT-HSFB2AO.I.H.G.S.X.
0.045.80.99TaAffx.53418.1.S1_atCA692598--4e+0At1g07660histone H4O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.799.9GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
46.399.9GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
7.698.7GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.797.1GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.296.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM111185genotype C22 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.294.8GSM111198genotype A77 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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