Co-expression analysis

Gene ID	TaAffx.108219.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g67090: RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) (HF=3e-1)
Module size	6 genes
NF	0.75
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.95	TaAffx.108219.1.S1_at	CA690622	-	-	3e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.26385.1.S1_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.6	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.6763.1.S1_at, orthologous to the query gene, TaAffx.108219.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	Zm.6763.1.S1_at	At1g67090	ribulose bisphosphate carboxylase small subunit1	-	2e-3	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.3668.1.A1_at	At1g67090	-	-	1e-10	At1g54450	calcium-binding EF-hand family protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.14574.1.A1_at	At1g67090	-	-	1e+0	At4g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.16313.2.S1_x_at	At1g67090	hypothetical protein LOC100272662	-	4e+0	At5g23320	ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A)	O.I.	H.G.	S.X.	Please select
0.82	94.6	Zm.13489.1.S1_at	At1g67090	hypothetical protein LOC100275030	-	4e+0	At2g43930	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.14573.1.S1_at	At1g67090	glucan endo-1,3-beta-glucosidase 7	-	9e-1	At3g46570	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.16340.1.A1_at	At1g67090	DNA binding protein	-	1e-2	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.6762.1.A1_at	At1g67090	hypothetical protein LOC100279105	-	2e+0	At5g38650	proteasome maturation factor UMP1 family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.14572.1.A1_at	At1g67090	-	-	4e+0	At1g23570	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.6757.1.S1_at	At1g67090	GAST1 protein	-	2e-3	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.676.1.S1_a_at	At1g67090	diphosphonucleotide phosphatase1	-	8e-4	At5g63980	SAL1	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.12138.1.S1_at	At1g67090	regulator of ribonuclease activity A	-	1e-4	At5g16450	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage