Co-expression analysis

Gene ID	TaAffx.108219.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g67090: RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) (HF=3e-1)
Module size	6 genes
NF	0.75
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.95	TaAffx.108219.1.S1_at	CA690622	-	-	3e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.26385.1.S1_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.6	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.29160.1.A1_at, orthologous to the query gene, TaAffx.108219.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	PtpAffx.29160.1.A1_at	At1g67090	-	-	3e+0	At2g33130	RALFL18 (ralf-like 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	RPTR-Ptp-X03453-1_at	At1g67090	-	-				O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.224271.1.S1_s_at	At1g67090	cc-nbs-lrr resistance protein	-	1e-3	At2g31725	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.215540.1.S1_at	At1g67090	hypothetical protein	-	4e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.223859.1.S1_at	At1g67090	hypothetical protein	-	1e-2	At1g72350	MADS-box protein (AGL60)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.214677.1.S1_at	At1g67090	hypothetical protein	-	3e+0	At2g20390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage