Co-expression analysis

Gene ID TaAffx.108219.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g67090: RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) (HF=3e-1)
Module size 6 genes
NF 0.75
%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8393.40.95TaAffx.108219.1.S1_atCA690622--3e-1At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.9198.20.96TaAffx.56013.1.S1_atCA658531--6e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.7790.80.96Ta.1977.2.A1_atBE231484--1e+0At3g07430emb1990 (embryo defective 1990)O.I.H.G.S.X.
0.6182.00.95TaAffx.39457.1.A1_atBG904975--2e+0Atmg00850-O.I.H.G.S.X.
0.6182.00.96TaAffx.26385.1.S1_x_atCA689363--4e+0At5g25090plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.26385.1.S1_atCA689363--4e+0At5g25090plastocyanin-like domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
12.999.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
12.699.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.798.9GSM298068Leaf tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.898.4GSM298089Leaf tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.298.1GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
5.497.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.897.2GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298065Leaf tissue of Paragon at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0291400, orthologous to the query gene, TaAffx.108219.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8496.0Os12g0291400At1g67090-Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)4e-5At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.8896.8Os12g0274700At1g67090-Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)9e-9At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.8896.8Os07g0141400At1g67090-23 kDa polypeptide of photosystem II2e-13At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.8696.4Os07g0544800At1g67090-Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP)1e-4At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.8696.4Os03g0778100At1g67090-Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F)6e-7At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.8596.1Os04g0414700At1g67090-Conserved hypothetical protein3e-5At1g08380PSAO (photosystem I subunit O)O.I.H.G.S.X.
0.8596.1Os11g0171300At1g67090-Fructose-bisphosphate aldolase, chloroplastprecursor (EC 4.1.2.13) (ALDP)5e-33At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.8496.0Os06g0316800At1g67090-Glycine-rich protein (Fragment)2e+0At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.8395.8Os07g0435300At1g67090-Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide)4e-9At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.8395.8Os12g0291100At1g67090-Ribulose bisphosphate carboxylase, small chainfamily protein9e-6At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.8295.0Os07g0148900At1g67090-Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein)4e-10At1g30380PSAK (photosystem I subunit K)O.I.H.G.S.X.
0.8295.0Os06g0320500At1g67090-Chlorophyll a/b-binding protein4e-9At3g54890LHCA1O.I.H.G.S.X.
0.8295.0Os02g0197600At1g67090-Chlorophyll a/b-binding protein type III(Fragment)1e-14At1g61520LHCA3O.I.H.G.S.X.
0.8194.8Os05g0560000At1g67090-Photosystem I reaction center subunit VI,chloroplast precursor (PSI- H) (Light-harvesting complexI 11 kDa protein) (GOS5 protein)4e-4At3g16140PSAH-1 (photosystem I subunit H-1)O.I.H.G.S.X.
0.8194.8Os08g0119800At1g67090--3e-2At2g33510protein bindingO.I.H.G.S.X.
0.8194.8Os08g0435900At1g67090-Lhca4 protein,Type 4 protein of light-harvestingcomplex of photosystem I precursor (Fragment)1e-8At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.8094.6Os01g0773700At1g67090-Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment)9e-13At5g66005Expressed proteinO.I.H.G.S.X.
0.7993.6Os07g0558400At1g67090-Chlorophyll a/b-binding protein CP29 precursor2e-50At5g01530chlorophyll A-B binding protein CP29 (LHCB4)O.I.H.G.S.X.
0.7893.4Os08g0560900At1g67090-Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D)2e-6At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.7793.1Os02g0581100At1g67090-Conserved hypothetical protein1e+0At3g06160transcriptional factor B3 family proteinO.I.H.G.S.X.
0.7391.1Os12g0575000At1g67090-Protein of unknown function DUF1118 family protein2e+0At4g11020unknown proteinO.I.H.G.S.X.
0.7391.1Os06g0264800At1g67090--3e-2At4g01150unknown proteinO.I.H.G.S.X.
0.7391.1Os07g0556200At1g67090-Rieske FeS protein precursor6e-4At4g03280PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)O.I.H.G.S.X.
0.6787.2Os04g0234600At1g67090-Sedoheptulose-1,7-bisphosphatase, chloroplastprecursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase)(SBPASE) (SED(1,7)P2ASE)6e-51At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.
0.6483.4Os05g0496200At1g67090--1e-73At1g56190phosphoglycerate kinase, putativeO.I.H.G.S.X.
0.5978.0Os04g0659100At1g67090-Glutamine synthetase shoot isozyme, chloroplastprecursor (EC 6.3.1.2) (Glutamate--ammonia ligase) (Clonelambda-GS31)3e-68At5g35630GS2 (GLUTAMINE SYNTHETASE 2)O.I.H.G.S.X.
0.5168.7Os03g0169100At1g67090-Ribulose-phosphate 3-epimerase, chloroplastprecursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase)(PPE) (RPE) (R5P3E)6e-66At5g61410RPEO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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