Co-expression analysis

Gene ID	TaAffx.108170.4.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g17609: HYH (HY5-HOMOLOG) (HF=2e+1)
Module size	22 genes
NF	0.40
%ile	63.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.89	TaAffx.108170.4.S1_at	CA689645	-	-	2e+1	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.92	TaAffx.91452.1.S1_at	CA610840	-	-	2e+1	At5g54360	zinc finger (C2H2 type) family protein-related	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.91	TaAffx.30005.1.S1_at	CA630801	-	-	1e+0	At4g00840	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.93	TaAffx.7150.1.S1_at	CA667568	-	-	4e+0	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.91	TaAffx.29234.1.S1_x_at	CA647550	-	-	7e-1	At5g11920	AtcwINV6 (6-&1-fructan exohydrolase)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.92	TaAffx.95641.1.S1_at	CA620605	-	-	3e-7	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.92	TaAffx.110179.1.S1_at	CA662677	-	-	3e-8	At5g16340	AMP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.90	TaAffx.114317.1.S1_at	CA595026	-	-	7e-2	At1g64200	VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.92	TaAffx.51913.1.S1_x_at	CA716536	-	-	8e-1	At5g56110	ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.92	TaAffx.112720.1.S1_at	CA621571	-	-	7e-5	At5g39580	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	TaAffx.112720.1.S1_x_at	CA621571	-	-	7e-5	At5g39580	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.91	TaAffx.121220.2.S1_at	CA677165	Harpin binding protein 1	-	4e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	Ta.15808.1.S1_at	CA487067	-	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.92	TaAffx.28107.1.S1_x_at	CA665003	-	-	5e-5	At1g69500	electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.105660.1.S1_at	CA731441	-	-	1e-3	At3g01015	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.93	TaAffx.53587.2.S1_at	CA697989	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	TaAffx.113024.3.S1_at	CA618057	-	-	3e-1	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.93	TaAffx.136997.1.S1_s_at	CA669283	-	-	4e+0	At3g49300	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.93	TaAffx.50094.2.A1_at	CA736298	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.1	99.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.4	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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