Co-expression analysis

Gene ID TaAffx.108170.4.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g17609: HYH (HY5-HOMOLOG) (HF=2e+1)
Module size 22 genes
NF 0.40
%ile 63.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9398.70.89TaAffx.108170.4.S1_atCA689645--2e+1At3g17609HYH (HY5-HOMOLOG)O.I.H.G.S.X.
0.6886.50.92TaAffx.91452.1.S1_atCA610840--2e+1At5g54360zinc finger (C2H2 type) family protein-relatedO.I.H.G.S.X.
0.6483.60.91TaAffx.30005.1.S1_atCA630801--1e+0At4g00840zinc ion bindingO.I.H.G.S.X.
0.5979.80.93TaAffx.7150.1.S1_atCA667568--4e+0At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4869.00.91TaAffx.29234.1.S1_x_atCA647550--7e-1At5g11920AtcwINV6 (6-&1-fructan exohydrolase)O.I.H.G.S.X.
0.4565.20.92TaAffx.95641.1.S1_atCA620605--3e-7At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.4464.50.92TaAffx.110179.1.S1_atCA662677--3e-8At5g16340AMP-binding protein, putativeO.I.H.G.S.X.
0.4464.50.90TaAffx.114317.1.S1_atCA595026--7e-2At1g64200VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3)O.I.H.G.S.X.
0.4362.20.92TaAffx.51913.1.S1_x_atCA716536--8e-1At5g56110ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103)O.I.H.G.S.X.
0.4159.60.92TaAffx.112720.1.S1_atCA621571--7e-5At5g39580peroxidase, putativeO.I.H.G.S.X.
0.3854.70.90TaAffx.112720.1.S1_x_atCA621571--7e-5At5g39580peroxidase, putativeO.I.H.G.S.X.
0.3753.00.91TaAffx.121220.2.S1_atCA677165Harpin binding protein 1-4e+0At5g50030invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3549.80.92Ta.15808.1.S1_atCA487067--1e+1At4g39260GR-RBP8O.I.H.G.S.X.
0.3142.70.92TaAffx.28107.1.S1_x_atCA665003--5e-5At1g69500electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingO.I.H.G.S.X.
0.3142.70.94Ta.19591.2.A1_a_atCA651113--4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.3142.70.93TaAffx.105660.1.S1_atCA731441--1e-3At3g01015-O.I.H.G.S.X.
0.2839.20.93TaAffx.53587.2.S1_atCA697989--7e-2At4g34290SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.2329.00.95TaAffx.113024.3.S1_atCA618057--3e-1At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.2329.00.92TaAffx.108544.1.S1_x_atCA663841--1e+1At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.2227.10.93TaAffx.136997.1.S1_s_atCA669283--4e+0At3g49300proline-rich family proteinO.I.H.G.S.X.
0.2227.10.95TaAffx.82721.1.S1_atCA668034--3e+1At4g20780calcium-binding protein, putativeO.I.H.G.S.X.
0.2024.00.93TaAffx.50094.2.A1_atCA736298--5e-1At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.199.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.499.1GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.498.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.098.5GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.298.1GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
5.497.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage