Co-expression analysis

Gene ID	TaAffx.108107.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g51950: IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18) (HF=4e+0)
Module size	7 genes
NF	0.72
%ile	93.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.95	TaAffx.108107.3.S1_at	CA714538	-	-	4e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	TaAffx.108219.1.S1_at	CA690622	-	-	3e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.96	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.95	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	TaAffx.26385.1.S1_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.6	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
11.4	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.2	98.8	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.1	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig2177_at, orthologous to the query gene, TaAffx.108107.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	Contig2177_at	At1g51950	-	-	6e-10	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig13896_at	At1g51950	-	-	5e-1	At5g49300	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig3246_at	At1g51950	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig12569_at	At1g51950	-	-	1e+0	At4g01680	MYB55 (myb domain protein 55)	O.I.	H.G.	S.X.	Please select
0.55	72.0	HV14L22u_at	At1g51950	-	-	2e-4	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig20893_at	At1g51950	-	-	4e-2	At1g44542	cyclase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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