Co-expression analysis

Gene ID TaAffx.107663.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g79480: - (HF=3e+0)
Module size 6 genes
NF 0.05
%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.80TaAffx.107663.1.S1_atCA696934--3e+0At1g79480-O.I.H.G.S.X.
0.1517.10.91Ta.27979.1.S1_atCD923810--4e+0At5g28590DNA-binding protein-relatedO.I.H.G.S.X.
0.1415.80.92TaAffx.78545.2.S1_atCA627335WRKY39 transcription factor-4e-3At4g33780-O.I.H.G.S.X.
0.045.80.92TaAffx.38268.1.A1_atBJ242361--1e+0At1g21326VQ motif-containing proteinO.I.H.G.S.X.
0.034.70.92TaAffx.119476.1.S1_atBJ241080--1e+0At1g07240UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)O.I.H.G.S.X.
0.012.40.94Ta.12360.1.A1_atCA648024--4e+0At1g70220unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.599.8GSM314267tissue type: seedling, leaf - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.598.3GSM314268tissue type: seedling, leaf - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.597.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620318_at, orthologous to the query gene, TaAffx.107663.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9095.61620318_atAt1g79480beta-tubulin-9e-56At5g62700TUB3O.I.H.G.S.X.
0.3751.71622494_atAt1g79480hypothetical protein LOC100257153-1e-50At1g50840POLGAMMA2 (polymerase gamma 2)O.I.H.G.S.X.
0.3548.51615788_atAt1g79480hypothetical protein LOC100250348-2e+0At5g47170unknown proteinO.I.H.G.S.X.
0.3548.51622391_atAt1g79480hypothetical protein LOC100244565-2e+0At4g12070unknown proteinO.I.H.G.S.X.
0.3446.81619595_atAt1g79480hypothetical protein LOC100256839-4e-39At4g04040MEE51 (maternal effect embryo arrest 51)O.I.H.G.S.X.
0.3345.71613521_atAt1g79480metallothionein-5e-19At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.3141.31606682_atAt1g79480hypothetical protein LOC100265566-2e-18At2g30460-O.I.H.G.S.X.
0.2937.71620677_atAt1g79480hypothetical protein LOC100257709-1e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.2937.71615738_atAt1g79480--1e+0At5g67640unknown proteinO.I.H.G.S.X.
0.2937.71611391_atAt1g79480hypothetical protein LOC100256320-1e-15At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.2937.71612154_atAt1g79480hypothetical protein LOC100255394-1e-74At1g795002-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)O.I.H.G.S.X.
0.2937.71612757_atAt1g79480hypothetical protein LOC100241266-1e+0At2g32560F-box family proteinO.I.H.G.S.X.
0.2837.71611331_atAt1g79480hypothetical protein LOC100243930-7e-18At5g19980integral membrane family proteinO.I.H.G.S.X.
0.2632.01621891_atAt1g79480hypothetical protein LOC100242841-8e-2At5g4152040S ribosomal protein S10 (RPS10B)O.I.H.G.S.X.
0.2632.01615754_atAt1g79480--3e-41At5g65470unknown proteinO.I.H.G.S.X.
0.2530.51621139_atAt1g79480hypothetical protein LOC100262947-3e-9At5g08390-O.I.H.G.S.X.
0.2530.51621252_atAt1g79480hypothetical protein LOC100263936-2e-8At3g08620KH domain-containing proteinO.I.H.G.S.X.
0.2530.51608697_atAt1g79480--4e+0At4g23420short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2428.71615991_s_atAt1g79480hypothetical protein LOC100241833-1e-22At4g38130HD1 (HISTONE DEACETYLASE 1)O.I.H.G.S.X.
0.2327.51611915_atAt1g79480hypothetical protein LOC100257368-2e-15At5g42620metalloendopeptidase/ zinc ion bindingO.I.H.G.S.X.
0.2327.51616336_atAt1g79480hypothetical protein LOC100256840-1e+0At1g17510unknown proteinO.I.H.G.S.X.
0.2327.51608494_atAt1g79480hypothetical protein LOC100253260-1e-76At2g34560katanin, putativeO.I.H.G.S.X.
0.2022.41611691_s_atAt1g79480hypothetical protein LOC100265089-6e-59At5g36290unknown proteinO.I.H.G.S.X.
0.1920.91609483_atAt1g79480similar to EBS1 (EMS-MUTAGENIZED BRI1 SUPPRESSOR 1); UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups-1e+0At3g49620DIN11 (DARK INDUCIBLE 11)O.I.H.G.S.X.
0.1920.91619198_atAt1g79480hypothetical protein LOC100257864-3e+0At4g26790GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.1819.41618802_s_atAt1g79480hypothetical protein LOC100264326-9e-4At1g34780ATAPRL4 (APR-like 4)O.I.H.G.S.X.
0.1819.41614216_atAt1g79480hypothetical protein LOC100260586-2e-72At1g53500MUM4 (MUCILAGE-MODIFIED 4)O.I.H.G.S.X.
0.1616.71609452_atAt1g79480hypothetical protein LOC100249768-3e-1At4g31460ribosomal protein L28 family proteinO.I.H.G.S.X.
0.1515.61615058_atAt1g79480hypothetical protein LOC100251131-4e+0At3g28290AT14AO.I.H.G.S.X.
0.1515.61619832_atAt1g79480hypothetical protein LOC100240976-1e-24At3g44660hda10 (histone deacetylase 10)O.I.H.G.S.X.
0.1414.41608358_atAt1g79480hypothetical protein LOC100266977-9e-27At4g27585band 7 family proteinO.I.H.G.S.X.
0.1313.31621583_atAt1g79480hypothetical protein LOC100266937-3e-12At1g05850POM1 (POM-POM1)O.I.H.G.S.X.
0.1313.31607928_atAt1g79480--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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