CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.107663.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g79480: - (HF=3e+0)

Module size 6 genes

NF 0.05

%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.80 TaAffx.107663.1.S1_at CA696934 - - 3e+0 At1g79480 - O.I. H.G. S.X.
0.15 17.1 0.91 Ta.27979.1.S1_at CD923810 - - 4e+0 At5g28590 DNA-binding protein-related O.I. H.G. S.X.
0.14 15.8 0.92 TaAffx.78545.2.S1_at CA627335 WRKY39 transcription factor - 4e-3 At4g33780 - O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.38268.1.A1_at BJ242361 - - 1e+0 At1g21326 VQ motif-containing protein O.I. H.G. S.X.
0.03 4.7 0.92 TaAffx.119476.1.S1_at BJ241080 - - 1e+0 At1g07240 UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5) O.I. H.G. S.X.
0.01 2.4 0.94 Ta.12360.1.A1_at CA648024 - - 4e+0 At1g70220 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.5 99.8 GSM314267 tissue type: seedling, leaf - rep2 GSE12508 Transcription patterns during wheat development
6.5 98.3 GSM314268 tissue type: seedling, leaf - rep3 GSE12508 Transcription patterns during wheat development
5.5 97.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.127521.1.A1_at, orthologous to the query gene, TaAffx.107663.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.127521.1.A1_at At1g79480 - - 5e-2 At3g06180 structural constituent of ribosome O.I. H.G. S.X.
0.43 69.7 PtpAffx.206737.1.S1_at At1g79480 hypothetical protein - 3e-4 At5g25752 RBL11 (RHOMBOID-LIKE PROTEIN 11) O.I. H.G. S.X.
0.31 53.7 PtpAffx.153993.1.A1_at At1g79480 hypothetical protein - 1e+1 At4g19250 kelch repeat-containing protein O.I. H.G. S.X.
0.25 43.6 PtpAffx.102390.1.A1_at At1g79480 - - 9e-10 At1g16680 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative O.I. H.G. S.X.
0.18 30.8 PtpAffx.220781.1.S1_at At1g79480 cytochrome P450 - 2e+0 At2g19850 - O.I. H.G. S.X.
0.13 21.6 Ptp.6222.1.S1_at At1g79480 hypothetical protein - 1e+0 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) O.I. H.G. S.X.
0.08 12.9 Ptp.4417.1.S1_at At1g79480 hypothetical protein - 3e-4 At1g22330 RNA binding / nucleic acid binding / nucleotide binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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