Co-expression analysis

Gene ID	TaAffx.107663.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g79480: - (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.80	TaAffx.107663.1.S1_at	CA696934	-	-	3e+0	At1g79480	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	Ta.27979.1.S1_at	CD923810	-	-	4e+0	At5g28590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	TaAffx.78545.2.S1_at	CA627335	WRKY39 transcription factor	-	4e-3	At4g33780	-	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.92	TaAffx.119476.1.S1_at	BJ241080	-	-	1e+0	At1g07240	UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.94	Ta.12360.1.A1_at	CA648024	-	-	4e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.5	99.8	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
6.5	98.3	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, HVSMEc0011A03f_at, orthologous to the query gene, TaAffx.107663.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	HVSMEc0011A03f_at	At1g79480	-	-	1e-23	Atcg00520	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig11095_at	At1g79480	-	-	2e-4	At3g19895	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig9355_s_at	At1g79480	-	-	7e+0	At5g55510	P-P-bond-hydrolysis-driven protein transmembrane transporter/ protein transporter	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig18484_at	At1g79480	-	-	7e+0	At5g64480	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig20359_at	At1g79480	-	-	2e+0	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig2475_at	At1g79480	-	-	7e-2	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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