Co-expression analysis

Gene ID	TaAffx.107511.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g57980: RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) (HF=2e+1)
Module size	6 genes
NF	0.58
%ile	83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.96	TaAffx.107511.1.S1_at	CA632217	-	-	2e+1	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.95	TaAffx.55930.1.S1_at	CA659349	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.8956.1.A1_at	BQ162686	-	-	3e+0	At3g31350	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.80426.1.S1_at	CA600418	-	-	4e-1	At2g12935	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.2	99.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
19.6	99.7	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
13.0	99.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
9.4	99.1	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.8	98.9	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
8.5	98.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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