Co-expression analysis

Gene ID	TaAffx.107252.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g30410: transcription factor (HF=2e+0)
Module size	32 genes
NF	0.20
%ile	34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.85	TaAffx.107252.1.S1_at	CA703600	-	-	2e+0	At4g30410	transcription factor	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.87	TaAffx.16054.1.A1_at	BG607284	-	-	3e+0	At2g41690	AT-HSFB3	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	Ta.8890.1.S1_a_at	BG906698	-	-	1e-1	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.92	TaAffx.92344.2.S1_s_at	CA735191	-	-	1e-1	At5g50510	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	TaAffx.38103.1.A1_at	BJ250050	-	-	2e+0	At4g05590	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	Ta.27964.1.S1_at	CD920460	-	-	1e-2	At5g13160	PBS1 (avrPphB susceptible 1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	Ta.6681.2.A1_at	BJ310189	-	-	7e-2	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.92	Ta.30674.1.S1_at	BQ620409	-	-	1e-5	At2g22420	peroxidase 17 (PER17) (P17)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.93	Ta.10597.1.S1_at	BQ166078	-	-	1e-1	At1g47780	acyl-protein thioesterase-related	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.91	Ta.30183.2.S1_a_at	CK197798	-	-	9e+0	At5g51040	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	Ta.28965.1.S1_at	CA604071	-	-	2e-13	At4g35640	ATSERAT3	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.90	Ta.30794.1.S1_at	CA617117	-	-	1e+1	At5g53780	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	Ta.13156.1.S1_at	BQ171819	-	-	8e-1	At4g10290	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.91	Ta.17059.1.S1_at	BQ172322	-	-	5e-8	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.17881.1.S1_at	CA625270	-	-	6e+0	At3g06100	NIP7	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	TaAffx.84283.1.S1_at	CA640951	-	-	4e+0	At1g32760	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.91	TaAffx.128418.47.A1_at	BJ251193	-	-	1e+0	At1g80133	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.91	Ta.28751.1.S1_at	CD373748	-	-	5e+0	At4g30390	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.93	Ta.5523.1.S1_at	CK152129	-	-	9e-3	At3g08810	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.25987.1.A1_at	CD454313	-	-	6e-3	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.91	TaAffx.119336.1.A1_at	BJ276571	-	-	4e+0	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.91	Ta.23301.2.A1_at	BJ219545	-	-	2e+1	At3g17155	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.92	Ta.4866.1.S1_at	CA730786	-	-	3e-3	At1g74530	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	Ta.19139.1.A1_at	CA647789	-	-	2e+1	At5g12323	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.94	Ta.21202.1.S1_at	CA620561	-	-	4e-4	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.92	Ta.25345.2.S1_x_at	CA728544	-	-	4e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.89	Ta.3257.1.S1_at	BJ209248	-	-	3e+0	At2g30933	-	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.91	Ta.16754.1.S1_at	CA611907	-	-	1e+0	At4g37710	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.91	Ta.25345.2.S1_a_at	CA728544	-	-	4e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.91	TaAffx.14213.1.S1_at	BJ275222	-	-	8e-6	At1g23110	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.92	Ta.18525.1.S1_at	CA638213	-	-	1e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.7863.2.S1_a_at	CA605400	-	-	7e-2	At4g34090	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.7	97.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage