Co-expression analysis

Gene ID TaAffx.106960.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g05160: 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative (HF=2e-8)
Module size 26 genes
NF 0.20
%ile 33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.30.91TaAffx.106960.2.S1_atCA708442--2e-8At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeO.I.H.G.S.X.
0.2839.20.95TaAffx.120014.1.S1_atCD897081--2e+0At2g03870small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2839.20.95Ta.10473.1.S1_atCA498403--6e-11At3g17040HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)O.I.H.G.S.X.
0.2735.60.94TaAffx.70620.1.S1_atBQ8027051-aminocyclopropane-1-carboxylate synthase-6e-3At4g08040ACS11O.I.H.G.S.X.
0.2735.60.94Ta.13978.1.S1_atBI751890--1e+0At5g56350pyruvate kinase, putativeO.I.H.G.S.X.
0.2532.10.95Ta.3053.1.S1_atBJ214585--8e-6At1g13450DNA binding protein GT-1O.I.H.G.S.X.
0.2329.00.93Ta.8792.3.S1_a_atCA686627--2e+0At2g34460flavin reductase-relatedO.I.H.G.S.X.
0.2329.00.95Ta.9928.1.S1_s_atBG904944--2e-2At4g10030hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2227.10.95Ta.23402.2.S1_a_atCA652368--1e+0At5g38895zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2227.10.94Ta.8476.1.S1_a_atBQ161954--1e+0At1g72680cinnamyl-alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.2125.50.94TaAffx.86514.1.S1_atCA606751--4e+0At1g03490ANAC006 (Arabidopsis NAC domain containing protein 6)O.I.H.G.S.X.
0.2024.00.97Ta.6895.1.S1_atCD886394--1e-15At4g28610PHR1 (PHOSPHATE STARVATION RESPONSE 1)O.I.H.G.S.X.
0.1719.80.95TaAffx.64619.1.S1_atBJ285816--2e-3At1g29720protein kinase family proteinO.I.H.G.S.X.
0.1618.20.95Ta.20011.1.S1_atCK214522--1e+1At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.1618.20.96Ta.30797.1.S1_atBJ265713--8e-10At3g25530GLYR1 (GLYOXYLATE REDUCTASE 1)O.I.H.G.S.X.
0.1618.20.96Ta.6462.2.S1_a_atCA650614--3e+0At5g18661unknown proteinO.I.H.G.S.X.
0.1517.10.95Ta.9380.3.S1_atCA647507--4e+0At1g44820aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.1517.10.96Ta.17892.1.S1_atBJ217605--8e-4At3g54360protein binding / zinc ion bindingO.I.H.G.S.X.
0.1517.10.95Ta.7528.1.A1_atBJ320713--6e-1At2g46080-O.I.H.G.S.X.
0.1314.60.92TaAffx.106960.1.S1_atCD932951--2e-2At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)O.I.H.G.S.X.
0.1314.60.96Ta.29812.1.S1_atCA597557--2e-11At3g27020YSL6 (YELLOW STRIPE LIKE 6)O.I.H.G.S.X.
0.1314.60.97Ta.2829.1.S1_atBJ276957--3e-16At4g01100ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)O.I.H.G.S.X.
0.0910.40.95Ta.7012.2.S1_x_atCA708999--3e-15At1g79870oxidoreductase family proteinO.I.H.G.S.X.
0.0910.40.95Ta.9630.2.S1_atCA691213--2e-1At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.089.40.96Ta.6705.1.A1_atCD901550--6e+0At3g52900unknown proteinO.I.H.G.S.X.
0.078.60.94Ta.28234.1.A1_atCA671249--2e+1At3g27890NQR (NADPH:QUINONE OXIDOREDUCTASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.499.4GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.996.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298066Leaf tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.391.5GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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