Co-expression analysis

Gene ID TaAffx.106876.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g44150: ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) (HF=3e-1)
Module size 6 genes
NF 0.00
%ile 0.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.69TaAffx.106876.1.S1_atCA709831--3e-1At2g44150ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3)O.I.H.G.S.X.
0.4058.40.92Ta.9470.3.S1_atCA667981--4e+0At2g04890SCL21 (SCARECROW-LIKE 21)O.I.H.G.S.X.
0.0910.40.92Ta.9049.2.A1_atCA606630--3e-1At2g19480NAP1O.I.H.G.S.X.
0.034.70.92Ta.7894.3.A1_atCA680072--4e+0At3g51300ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)O.I.H.G.S.X.
-0.70.84TaAffx.26027.1.S1_atCA692935--3e+0At5g03530RABC2A (RAB GTPASE HOMOLOG C2A)O.I.H.G.S.X.
-0.70.87Ta.3159.1.S1_atBJ228678--5e+0At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.398.6GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5397.1.A1_at, orthologous to the query gene, TaAffx.106876.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.5Zm.5397.1.A1_atAt2g44150--3e+0At5g37055SEF (SERRATED LEAVES AND EARLY FLOWERING)O.I.H.G.S.X.
0.5469.8Zm.6916.1.S1_atAt2g44150hypothetical protein LOC100273981-9e-13At5g66750CHR1 (CHROMATIN REMODELING 1)O.I.H.G.S.X.
0.5065.7Zm.12150.2.S1_atAt2g44150hypothetical protein LOC100273319-9e-1At4g31340myosin heavy chain-relatedO.I.H.G.S.X.
0.4961.9Zm.3657.1.A1_s_atAt2g44150--1e+0At5g42635glycine-rich proteinO.I.H.G.S.X.
0.4455.7Zm.4323.1.S1_atAt2g44150--2e+0At1g49150unknown proteinO.I.H.G.S.X.
0.4455.7Zm.6094.1.A1_atAt2g44150hypothetical protein LOC100277153-6e-2At5g03880electron carrierO.I.H.G.S.X.
0.4251.3Zm.3249.1.A1_atAt2g44150COV1-like protein-5e+0At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.4251.3Zm.2157.7.S1_atAt2g44150ribosomal protein S11-1e-38At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.4251.3Zm.6182.1.S1_atAt2g4415060S ribosomal protein L29-1e-21At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.4149.7Zm.6173.1.A1_atAt2g44150IDP22 protein-2e+0At1g17615disease resistance protein (TIR-NBS class), putativeO.I.H.G.S.X.
0.4149.7Zm.618.1.S1_atAt2g44150tonoplast membrane integral protein ZmTIP4-2-1e-2At2g25810TIP4O.I.H.G.S.X.
0.4048.5Zm.6830.1.S1_atAt2g44150peptidyl-prolyl cis-trans isomerase CYP19-3-8e-3At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.3945.6Zm.62.1.S1_atAt2g44150anthocyaninless2-6e+0At4g28050TET7 (TETRASPANIN7)O.I.H.G.S.X.
0.3844.2Zm.14497.1.A1_atAt2g44150histone H2B-1e-26At1g07790HTB1O.I.H.G.S.X.
0.3844.2Zm.6103.3.S1_atAt2g44150--8e-1At1g21010unknown proteinO.I.H.G.S.X.
0.3742.3Zm.3227.1.A1_atAt2g44150--2e-8At3g18290EMB2454 (embryo defective 2454)O.I.H.G.S.X.
0.3742.3ZmAffx.707.1.A1_atAt2g44150transposon protein-8e-1At5g03310auxin-responsive family proteinO.I.H.G.S.X.
0.3742.3Zm.7589.1.A1_atAt2g44150hypothetical protein LOC100277109-2e+0At4g32680unknown proteinO.I.H.G.S.X.
0.3641.3Zm.7017.1.A1_atAt2g44150hypothetical protein LOC100272933-2e+0At1g31760SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3538.9Zm.5047.1.A1_atAt2g44150ATP-dependent Clp protease proteolytic subunit 1-6e-4At1g66670CLPP3O.I.H.G.S.X.
0.3437.2Zm.6480.2.S1_a_atAt2g44150hypothetical protein LOC100272627-1e-11At5g64200ATSC35O.I.H.G.S.X.
0.3437.2Zm.4929.2.A1_a_atAt2g44150hypothetical protein LOC100192571-3e+0At5g28620protein kinase C-relatedO.I.H.G.S.X.
0.3233.4Zm.15207.1.A1_atAt2g44150nam1 protein-4e+0At5g08760unknown proteinO.I.H.G.S.X.
0.3233.4Zm.12264.1.S1_atAt2g44150--5e+0At4g29570cytidine deaminase, putative / cytidine aminohydrolase, putativeO.I.H.G.S.X.
0.3233.4Zm.3303.2.A1_atAt2g44150lipoxygenase-3e+0At3g22400LOX5O.I.H.G.S.X.
0.3131.6Zm.16593.2.S1_a_atAt2g44150signal peptidase complex subunit 3-9e-18At3g05230signal peptidase subunit family proteinO.I.H.G.S.X.
0.3029.8Zm.2733.1.A1_atAt2g44150hypothetical protein LOC100193755-2e+0At4g28030GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.3029.8Zm.1011.1.S1_atAt2g44150hypothetical protein LOC100192700-3e+0At1g35242unknown proteinO.I.H.G.S.X.
0.2928.1Zm.6715.1.S1_a_atAt2g44150RING finger and CHY zinc finger domain-containing protein 1-2e-5At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2928.1Zm.3169.2.S1_atAt2g44150hypothetical protein LOC100279753-4e-53At5g44635minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.
0.2828.1Zm.16462.1.A1_atAt2g44150Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase-7e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.2724.6Zm.7644.2.S1_x_atAt2g44150--4e+0At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2622.7Zm.3913.1.A1_atAt2g44150hypothetical protein LOC100279777-3e-6At3g077503' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.2521.3Zm.10662.1.S1_atAt2g44150--2e+0At3g24516unknown proteinO.I.H.G.S.X.
0.2521.3Zm.16824.2.S1_atAt2g44150--1e+0At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2318.6Zm.3844.1.S1_atAt2g44150group 3 pollen allergen-2e+0At4g14270-O.I.H.G.S.X.
0.2115.5Zm.16590.2.A1_a_atAt2g44150--7e-5At1g14170KH domain-containing proteinO.I.H.G.S.X.
0.1811.6Zm.5348.1.A1_atAt2g44150hypothetical protein LOC100216737-6e-2At4g29970F-box family proteinO.I.H.G.S.X.
0.169.4Zm.7084.1.S1_atAt2g44150hypothetical protein LOC100216721-1e-2At2g20760protein binding / structural moleculeO.I.H.G.S.X.
0.147.7Zm.6103.2.S1_atAt2g44150UBA and UBX domain-containing protein-2e-1At4g04210PUX4O.I.H.G.S.X.
0.147.7Zm.7035.1.A1_atAt2g44150hypothetical protein LOC100280000-3e+0At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.115.3Zm.7066.1.S1_atAt2g44150--5e-7At2g23090unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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