Co-expression analysis

Gene ID TaAffx.106876.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g44150: ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) (HF=3e-1)
Module size 6 genes
NF 0.00
%ile 0.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.69TaAffx.106876.1.S1_atCA709831--3e-1At2g44150ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3)O.I.H.G.S.X.
0.4058.40.92Ta.9470.3.S1_atCA667981--4e+0At2g04890SCL21 (SCARECROW-LIKE 21)O.I.H.G.S.X.
0.0910.40.92Ta.9049.2.A1_atCA606630--3e-1At2g19480NAP1O.I.H.G.S.X.
0.034.70.92Ta.7894.3.A1_atCA680072--4e+0At3g51300ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)O.I.H.G.S.X.
-0.70.84TaAffx.26027.1.S1_atCA692935--3e+0At5g03530RABC2A (RAB GTPASE HOMOLOG C2A)O.I.H.G.S.X.
-0.70.87Ta.3159.1.S1_atBJ228678--5e+0At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
7.398.6GSM314259tissue type: germinating seed, embryo - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.098.5GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.998.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.697.8GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM314258tissue type: germinating seed, embryo - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.93809.1.S1_at, orthologous to the query gene, TaAffx.106876.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5683.9PtpAffx.93809.1.S1_atAt2g44150--8e-2At5g17510unknown proteinO.I.H.G.S.X.
0.9199.2PtpAffx.86753.2.A1_atAt2g44150hypothetical protein-1e+0At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.9199.2PtpAffx.891.5.S1_a_atAt2g44150--2e-25At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.9199.2PtpAffx.159720.1.A1_atAt2g44150--2e-2At1g29850double-stranded DNA-binding family proteinO.I.H.G.S.X.
0.7794.9PtpAffx.249.802.A1_atAt2g44150--6e-3At3g24050GATA transcription factor 1 (GATA-1)O.I.H.G.S.X.
0.7192.6Ptp.2147.3.S1_atAt2g44150glutaredoxin S14-6e-12At3g54900CXIP1 (CAX INTERACTING PROTEIN 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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