Co-expression analysis

Gene ID TaAffx.106823.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g55570: unknown protein (HF=4e+0)
Module size 7 genes
NF 0.48
%ile 74.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3651.90.94TaAffx.106823.1.S1_x_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.8694.10.94Ta.14479.3.S1_x_atCA630294--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.5374.90.94Ta.3083.2.A1_atBJ254365--4e+0At3g05602unknown proteinO.I.H.G.S.X.
0.5273.70.94Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.4767.90.95Ta.14146.3.S1_x_atCA697368--2e+1At5g24313unknown proteinO.I.H.G.S.X.
0.3651.90.94Ta.2593.3.S1_x_atCA665053--4e-1At4g23980ARF9 (AUXIN RESPONSE FACTOR 9)O.I.H.G.S.X.
0.3040.90.95TaAffx.25126.1.S1_atCA705922--3e+0At3g17460PHD finger family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.9GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
6.698.3GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
5.998.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM324484Si- B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.194.5GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.094.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.692.9GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
2.592.5GSM314281tissue type: 3-5 DAP caryopsis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.17728.1.A1_at, orthologous to the query gene, TaAffx.106823.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.17728.1.A1_atAt5g55570--1e+0At3g25573unknown proteinO.I.H.G.S.X.
0.4455.7Zm.10119.1.A1_atAt5g55570hypothetical protein LOC100274094-6e-9At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.4251.3Zm.13303.1.S1_atAt5g55570--4e+0At1g27390TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)O.I.H.G.S.X.
0.4048.5Zm.12674.1.A1_atAt5g55570--5e-5At1g34350unknown proteinO.I.H.G.S.X.
0.3844.2Zm.10098.1.A1_atAt5g55570hypothetical protein LOC100272958-2e-2At2g44060late embryogenesis abundant family protein / LEA family proteinO.I.H.G.S.X.
0.3641.3Zm.17862.1.A1_atAt5g55570serine/threonine-protein kinase WNK4-5e+0At4g09440unknown proteinO.I.H.G.S.X.
0.3437.2ZmAffx.785.1.S1_atAt5g55570--3e+0At5g51780basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3233.4ZmAffx.777.1.A1_atAt5g55570hypothetical protein LOC100191464-2e-1At5g11440CID5O.I.H.G.S.X.
0.3131.6Zm.12433.1.S1_atAt5g55570tyrosyl-tRNA synthetase-4e-18At2g33840tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.
0.2928.1Zm.15416.1.A1_atAt5g55570--2e-1At1g68862unknown proteinO.I.H.G.S.X.
0.169.4Zm.12844.2.A1_a_atAt5g55570hypothetical protein LOC100194377-4e-10At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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