Co-expression analysis

Gene ID	TaAffx.106823.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g55570: unknown protein (HF=4e+0)
Module size	7 genes
NF	0.48
%ile	74.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	51.9	0.94	TaAffx.106823.1.S1_x_at	CA710938	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.94	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.94	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	Ta.2593.3.S1_x_at	CA665053	-	-	4e-1	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.9	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.6	98.3	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.9	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.1	94.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6082.1.S1_at, orthologous to the query gene, TaAffx.106823.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.6082.1.S1_at	At5g55570	-	-	3e+0	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.4766.2.S1_at	At5g55570	Dof21	-	1e-16	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.79907.1.S1_at	At5g55570	-	-	2e-15	At2g44770	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.6006.1.S1_at	At5g55570	-	-	7e-16	At1g74790	catalytic	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.77343.2.S1_s_at	At5g55570	-	-	1e-2	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.6664.2.S1_at	At5g55570	Nodulin-26	-	2e-38	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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