Co-expression analysis

Gene ID	TaAffx.106267.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=1e-2)
Module size	7 genes
NF	0.61
%ile	86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.2	0.91	TaAffx.106267.1.S1_x_at	CA720966	-	-	1e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.95	Ta.4191.1.A1_at	BJ239251	-	-	5e-4	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.14101.1.S1_x_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.14101.1.S1_at	BQ804732	-	-	2e-10	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.28600.1.S1_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.13209.1.S1_at	CA702541	-	-	5e-4	At1g80050	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	Ta.28600.1.S1_a_at	BE443069	-	-	2e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.6	99.7	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.1	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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