Co-expression analysis

Gene ID TaAffx.105901.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g20620: UBQ4 (HF=2e-2)
Module size 33 genes
NF 0.48
%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8994.60.83TaAffx.105901.1.S1_atCA728021--2e-2At5g20620UBQ4O.I.H.G.S.X.
0.7489.40.84Ta.4375.1.A1_atBJ265156--3e-4At4g19680IRT2O.I.H.G.S.X.
0.7288.30.85TaAffx.119758.1.S1_atBJ259546--4e+0At5g19570unknown proteinO.I.H.G.S.X.
0.6986.90.83Ta.23407.1.S1_atCA697139--6e+0At5g42570-O.I.H.G.S.X.
0.6786.30.86TaAffx.87092.1.S1_atCA597138--6e+0At1g52343unknown proteinO.I.H.G.S.X.
0.5979.80.87TaAffx.113351.1.S1_x_atCA614654--2e+1At5g55980serine-rich protein-relatedO.I.H.G.S.X.
0.5879.20.86TaAffx.33701.1.S1_atCD909099--2e+1At5g20500glutaredoxin, putativeO.I.H.G.S.X.
0.5879.20.85Ta.5785.1.S1_atBJ289636--3e+0At5g02210-O.I.H.G.S.X.
0.5779.20.85TaAffx.9113.1.S1_atCA611964--9e-1At3g12060unknown proteinO.I.H.G.S.X.
0.5779.20.86TaAffx.43413.1.A1_atBQ168921--9e-1At5g66490unknown proteinO.I.H.G.S.X.
0.5475.50.88TaAffx.78789.1.S1_atCA727356--3e-1At1g13620unknown proteinO.I.H.G.S.X.
0.5273.70.84Ta.4144.1.S1_atBJ259785--1e+1At5g25940early nodulin-relatedO.I.H.G.S.X.
0.4969.70.86TaAffx.84411.1.S1_atCA637352--8e-1At5g66000unknown proteinO.I.H.G.S.X.
0.4969.70.84TaAffx.77857.1.S1_atBJ265935--2e-9At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.
0.4969.70.82TaAffx.59846.1.S1_x_atCA594306--3e-1At2g21237unknown proteinO.I.H.G.S.X.
0.4969.70.86TaAffx.37294.1.S1_atBJ287569--1e+0At1g52315unknown proteinO.I.H.G.S.X.
0.4869.00.86TaAffx.114162.1.S1_atCA597636--3e-1At1g19320pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.4767.90.86Ta.27917.1.A1_atCD897727--2e+1At5g56940ribosomal protein S16 family proteinO.I.H.G.S.X.
0.4767.90.87Ta.10648.2.S1_x_atBJ316751--9e-1At1g26800zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4565.20.86TaAffx.59846.1.S1_atCA594306--3e-1At2g21237unknown proteinO.I.H.G.S.X.
0.4464.50.85Ta.9817.1.S1_atBJ232472--4e+0At5g46115unknown proteinO.I.H.G.S.X.
0.4464.50.88Ta.10648.1.S1_x_atBQ166184--2e-1At4g30470cinnamoyl-CoA reductase-relatedO.I.H.G.S.X.
0.4464.50.86TaAffx.87245.1.S1_atCA593404--4e+0At5g37380DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4362.20.84Ta.11389.1.A1_atBQ169996--1e+1At5g60400unknown proteinO.I.H.G.S.X.
0.4260.90.83TaAffx.120444.1.A1_atBJ219262--3e-1At2g07280unknown proteinO.I.H.G.S.X.
0.4260.90.84TaAffx.9019.1.S1_atCA616004--1e+0At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.4260.90.81Ta.25958.1.A1_atCD454802--3e-4At3g21840ASK7 (ARABIDOPSIS SKP1-LIKE 7)O.I.H.G.S.X.
0.4159.60.90TaAffx.130510.1.S1_atCD913420--7e+0At5g55430unknown proteinO.I.H.G.S.X.
0.4058.40.83TaAffx.128418.32.S1_atBJ298895--1e+0At2g31180MYB14 (MYB DOMAIN PROTEIN 14)O.I.H.G.S.X.
0.4058.40.77Ta.13941.1.S1_atCK209172--2e+0At5g06265hyaluronan mediated motility receptor-relatedO.I.H.G.S.X.
0.3854.70.84Ta.3487.3.S1_x_atCA659295--7e-8At1g72080unknown proteinO.I.H.G.S.X.
0.3448.10.85TaAffx.12908.1.A1_atBJ217775--7e+0At1g12530unknown proteinO.I.H.G.S.X.
0.3346.90.83Ta.3005.1.S1_a_atBJ217684--3e-3At5g08170EMB1873 (EMBRYO DEFECTIVE 1873)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
8.498.9GSM139930Anther immature pollen rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
7.798.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.398.6GSM139926Anther tetrads rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.297.5GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.695.6GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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