Co-expression analysis

Gene ID TaAffx.105893.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g74890: ARR15 (RESPONSE REGULATOR 15) (HF=3e-1)
Module size 6 genes
NF 0.57
%ile 83.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.00.95TaAffx.105893.1.S1_atCA728292--3e-1At1g74890ARR15 (RESPONSE REGULATOR 15)O.I.H.G.S.X.
0.8092.20.95TaAffx.7591.1.S1_atCA656091--2e+1Atmg01020-O.I.H.G.S.X.
0.7389.10.95TaAffx.105893.1.S1_x_atCA728292--3e-1At1g74890ARR15 (RESPONSE REGULATOR 15)O.I.H.G.S.X.
0.4464.50.95TaAffx.131176.1.S1_atBF482824--4e+0At5g43770proline-rich family proteinO.I.H.G.S.X.
0.3549.80.95TaAffx.77881.1.S1_atCA741326--2e+1Atcg00065-O.I.H.G.S.X.
0.3346.90.95TaAffx.38217.1.S1_atBJ244494--7e+0At5g11690ATTIM17-3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.198.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.198.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.698.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.598.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM250907Tc_7dpi_mock_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM298053Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298056Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM143520Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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