Co-expression analysis

Gene ID TaAffx.105690.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g10680: transcription factor IIB (TFIIB) family protein (HF=9e+0)
Module size 6 genes
NF 0.12
%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.85TaAffx.105690.1.S1_atCA731068--9e+0At4g10680transcription factor IIB (TFIIB) family proteinO.I.H.G.S.X.
0.4058.40.94TaAffx.25219.1.S1_atCA704428--6e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.2329.00.96Ta.6113.1.S1_a_atCA668966--3e+0At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.1213.30.96Ta.12197.1.A1_s_atBQ801071--5e+0At3g48231LCR48 (Low-molecular-weight cysteine-rich 48)O.I.H.G.S.X.
0.1112.40.97Ta.3659.1.S1_atCA670477--2e-14At4g15802-O.I.H.G.S.X.
0.034.70.96Ta.1403.1.S1_s_atU49103.1calmodulin TaCaM1-1 /// calmodulin TaCaM3-3-2e-71At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.098.5GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM138207genotype B11 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
4.196.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.896.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.395.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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