Co-expression analysis

Gene ID TaAffx.105650.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g38080: IRX12 (IRREGULAR XYLEM 12) (HF=6e-3)
Module size 19 genes
NF 0.82
%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.40.91TaAffx.105650.1.S1_atCA732063--6e-3At2g38080IRX12 (IRREGULAR XYLEM 12)O.I.H.G.S.X.
0.9298.50.94TaAffx.73027.1.A1_atBE516792--2e-1At1g76920F-box family protein (FBX3)O.I.H.G.S.X.
0.9198.20.94TaAffx.70609.1.S1_atBQ802813--1e+0At1g62900O-methyltransferase, putativeO.I.H.G.S.X.
0.9094.80.96TaAffx.38658.1.S1_atBJ222843--4e+0At5g42290transcription activator-relatedO.I.H.G.S.X.
0.8694.10.94TaAffx.40634.3.S1_s_atCA664419--4e+0At3g06985LCR44 (Low-molecular-weight cysteine-rich 44)O.I.H.G.S.X.
0.8694.10.95TaAffx.120526.1.S1_atCA633945--4e+0At4g29640cytidine deaminase, putative / cytidine aminohydrolase, putativeO.I.H.G.S.X.
0.8694.10.95Ta.29471.1.S1_atCA639407--3e-1At1g24240ribosomal protein L19 family proteinO.I.H.G.S.X.
0.8694.10.93TaAffx.114113.1.S1_atCA598455--4e+0At5g24610unknown proteinO.I.H.G.S.X.
0.8694.10.96Ta.18201.1.A1_atCA631348--5e+0At5g4577560S ribosomal protein L11 (RPL11D)O.I.H.G.S.X.
0.8593.80.94Ta.27268.1.S1_atBT009115.1--7e-1At3g63420AGG1 (Arabidopsis Ggamma-subunit 1)O.I.H.G.S.X.
0.8393.40.95TaAffx.93159.1.A1_atBJ227857--1e+0At2g29125RTFL2 (ROTUNDIFOLIA LIKE 2)O.I.H.G.S.X.
0.8292.70.94Ta.19005.1.S1_atCA645707--3e+1At5g51040unknown proteinO.I.H.G.S.X.
0.8292.70.94Ta.18981.1.S1_atCA645095--3e-4At5g60020LAC17 (laccase 17)O.I.H.G.S.X.
0.7891.10.93TaAffx.120526.2.S1_atCA731416--4e+0At1g32030DNA bindingO.I.H.G.S.X.
0.7188.00.95TaAffx.129423.1.S1_x_atCK152788--2e-2At3g10320transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.6886.50.93TaAffx.97211.1.S1_atAJ614654--1e+0At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.6886.50.94TaAffx.129423.1.S1_atCK152788--2e-2At3g10320transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.6786.30.95Ta.8672.1.A1_atBQ162204--3e+0At4g34620SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)O.I.H.G.S.X.
0.5879.20.95TaAffx.130775.1.S1_atBJ284851--2e+1Atmg00900-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.0GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
7.898.7GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
7.498.6GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.498.2GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
6.198.1GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
5.998.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM343686Wheat var. Kennedy_Fp inoculated_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.997.3GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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