Co-expression analysis

Gene ID	TaAffx.105595.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g32170: XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) (HF=6e-4)
Module size	6 genes
NF	0.03
%ile	9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.89	TaAffx.105595.1.S1_at	CK208387	-	-	6e-4	At1g32170	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.89	TaAffx.560.2.S1_at	CA728894	-	-	2e+1	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.88	TaAffx.114295.1.S1_x_at	CK206308	-	-	2e-2	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.90	Ta.23083.1.S1_at	CA649423	-	-	2e-3	At4g30440	GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1)	O.I.	H.G.	S.X.	Please select
0.02	3.6	0.90	TaAffx.77847.1.S1_at	CA741837	-	-	1e+0	At4g04800	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.90	Ta.30591.1.S1_s_at	CK210114	-	-	2e+0	At1g12780	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.5	99.7	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
19.5	99.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
19.3	99.7	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.4	99.1	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17769.1.S1_at, orthologous to the query gene, TaAffx.105595.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.17769.1.S1_at	At1g32170	-	-	3e-6	At1g32170	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	O.I.	H.G.	S.X.	Please select
0.77	90.3	Gma.17769.1.S1_s_at	At1g32170	-	-	3e-6	At1g32170	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.92127.1.S1_s_at	At1g32170	dehydration responsive element binding protein	-	6e-15	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.89705.1.S1_s_at	At1g32170	-	-	2e-4	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.8053.1.S1_at	At1g32170	cryptochrome 2	-	2e-35	At1g04400	CRY2 (CRYPTOCHROME 2)	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.12040.1.S1_at	At1g32170	-	-	2e-2	At4g39870	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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