Co-expression analysis

Gene ID	TaAffx.104873.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g45520: unknown protein (HF=7e-1)
Module size	27 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	92.7	0.93	TaAffx.104873.1.S1_at	CA743694	-	-	7e-1	At2g45520	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.94	TaAffx.107724.1.S1_at	CA696363	-	-	4e-2	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.94	Ta.13083.1.S1_at	CA485953	-	-	3e-1	At4g12040	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	TaAffx.107724.1.S1_x_at	CA696363	-	-	4e-2	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	Ta.17601.1.S1_at	CA622316	-	-	4e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	Ta.26670.1.A1_at	CD491523	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.94	TaAffx.85651.1.S1_at	CA620840	-	-	1e+1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.94	Ta.18356.1.S1_at	CA635027	-	-	3e+0	At1g48000	MYB112 (myb domain protein 112)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.83097.1.S1_at	CA662094	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.26470.1.S1_at	CA688638	-	-	4e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	TaAffx.55930.1.S1_at	CA659349	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.65565.2.S1_at	BJ232957	-	-	3e-1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	TaAffx.107511.1.S1_at	CA632217	-	-	2e+1	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.93	TaAffx.23723.1.S1_at	CA731348	-	-	2e+1	At5g09445	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	TaAffx.25008.1.S1_at	CA708299	-	-	1e+1	At5g24370	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.30782.1.S1_at	CA622085	-	-	2e+1	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.94	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	Ta.28609.1.S1_x_at	CK217364	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.79437.1.S1_at	CA715704	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	Ta.6666.2.S1_a_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.3	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8	97.9	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.6	97.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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