Co-expression analysis

Gene ID	TaAffx.104796.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=3e+0)
Module size	11 genes
NF	0.40
%ile	64.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.80	TaAffx.104796.1.S1_x_at	CA744716	-	-	3e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.86	Ta.578.1.S1_at	BE489213	-	-	9e-1	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.86	Ta.6578.3.A1_at	BJ308193	-	-	1e+0	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.85	Ta.1391.2.S1_at	CK211679	-	-	9e-11	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.89	Ta.17974.1.A1_at	CA623388	-	-	4e-11	At1g56045	ribosomal protein L41 family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.85	TaAffx.86216.1.S1_at	CA613951	-	-	1e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.86	TaAffx.29059.1.S1_x_at	CA651336	-	-	1e+0	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.91	Ta.17937.1.S1_at	CA626136	-	-	2e+0	At3g48450	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.91	TaAffx.131855.1.S1_at	CA695496	-	-	6e+0	At3g01516	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.88	TaAffx.83608.1.S1_at	CA655505	-	-	4e+0	At4g10390	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.85	TaAffx.35314.1.S1_at	BQ609804	-	-	3e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
10.5	99.2	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.3	98.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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