CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9954.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g07490: unknown protein (HF=3e+0)

Module size 35 genes

NF 0.34

%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.99 100.0 0.90 Ta.9954.1.A1_at BJ237190 - - 3e+0 At5g07490 unknown protein O.I. H.G. S.X.
0.49 69.7 0.96 TaAffx.11961.1.S1_at BJ310417 - - 7e-2 At1g56500 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.46 66.8 0.96 Ta.13234.1.S1_at CA707206 - - 6e+0 At3g51200 auxin-responsive family protein O.I. H.G. S.X.
0.45 65.2 0.97 Ta.12142.1.A1_s_at BQ171675 - - 4e-1 At3g10130 SOUL heme-binding family protein O.I. H.G. S.X.
0.42 60.9 0.96 TaAffx.108221.1.S1_at CD880236 - - 4e-7 At1g54520 unknown protein O.I. H.G. S.X.
0.42 60.9 0.97 Ta.14695.1.S1_at CA680229 - - 1e+0 At1g44414 unknown protein O.I. H.G. S.X.
0.41 59.6 0.97 TaAffx.123205.1.S1_at CD861867 - - 3e-6 At1g51110 plastid-lipid associated protein PAP / fibrillin family protein O.I. H.G. S.X.
0.41 59.6 0.96 Ta.22648.1.S1_a_at CK211825 - - 7e+0 At3g44140 unknown protein O.I. H.G. S.X.
0.40 58.4 0.97 Ta.5590.1.S1_x_at CK213247 - - 1e+0 At1g37140 MCT1 (mei2 C-Terminal RRM only like 1) O.I. H.G. S.X.
0.39 56.1 0.97 Ta.8219.1.S1_at CD877084 - - 2e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.39 56.1 0.98 Ta.12218.1.A1_at CA731361 - - 3e+0 At1g30460 CPSF30 O.I. H.G. S.X.
0.38 54.7 0.95 TaAffx.58649.1.S1_at CD884101 - - 2e-2 At5g35970 DNA-binding protein, putative O.I. H.G. S.X.
0.36 51.9 0.96 Ta.22042.1.S1_at CA717521 - - 2e-4 At1g66940 protein kinase-related O.I. H.G. S.X.
0.36 51.9 0.97 Ta.981.1.S1_x_at CD884037 - - 3e+0 At1g15980 NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) O.I. H.G. S.X.
0.35 49.8 0.96 Ta.881.1.S1_a_at CK213344 - - 9e+0 At4g24974 - O.I. H.G. S.X.
0.35 49.8 0.94 Ta.517.1.A1_at BQ172144 - - 4e+0 At3g01230 unknown protein O.I. H.G. S.X.
0.34 48.1 0.96 Ta.22455.1.S1_at CA746040 - - 1e+1 At5g28615 - O.I. H.G. S.X.
0.33 46.9 0.95 Ta.7722.3.S1_a_at BE213326 - - 2e+0 At3g52210 mRNA capping enzyme family protein O.I. H.G. S.X.
0.33 46.9 0.96 Ta.12169.1.S1_at CD863887 - - 1e+0 At1g16880 uridylyltransferase-related O.I. H.G. S.X.
0.31 42.7 0.97 Ta.7769.1.A1_at BQ171706 - - 1e-8 At1g71500 Rieske (2Fe-2S) domain-containing protein O.I. H.G. S.X.
0.31 42.7 0.94 Ta.18152.2.S1_at BQ803082 - - 2e+0 At4g26965 NADH:ubiquinone oxidoreductase family protein O.I. H.G. S.X.
0.31 42.7 0.98 Ta.13544.1.S1_a_at CK215541 - - 8e-3 At5g21430 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.30 40.9 0.94 Ta.6706.1.A1_at BQ170659 - - 7e+0 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.
0.30 40.9 0.96 Ta.27320.1.S1_s_at CD454918 - - 8e-115 At1g50250 FTSH1 (FtsH protease 1) O.I. H.G. S.X.
0.30 40.9 0.96 TaAffx.116357.1.A1_at BJ275093 - - 5e-16 At1g77930 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.29 39.2 0.95 Ta.9584.1.S1_at BJ228075 - - 4e+0 At1g36240 60S ribosomal protein L30 (RPL30A) O.I. H.G. S.X.
0.29 39.2 0.97 Ta.27320.1.S1_x_at CD454918 - - 8e-115 At1g50250 FTSH1 (FtsH protease 1) O.I. H.G. S.X.
0.29 39.2 0.97 TaAffx.30865.1.S1_at CA621506 - - 4e+0 At3g17261 unknown protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.8027.1.S1_x_at BQ171553 - - 3e+0 At3g48360 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) O.I. H.G. S.X.
0.29 39.2 0.96 Ta.680.1.A1_a_at BG907029 - - 1e-1 At3g08010 ATAB2 O.I. H.G. S.X.
0.28 39.2 0.96 Ta.680.1.A1_x_at BG907029 - - 1e-1 At3g08010 ATAB2 O.I. H.G. S.X.
0.27 35.6 0.91 Ta.25734.1.A1_at CD374098 - - 5e+0 At3g57190 peptide chain release factor, putative O.I. H.G. S.X.
0.23 29.0 0.98 Ta.1147.1.A1_x_at BG908398 - - 3e+0 At5g55720 pectate lyase family protein O.I. H.G. S.X.
0.22 27.1 0.92 Ta.12331.1.A1_s_at BQ172113 - - 9e-1 At3g26520 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.18 21.0 0.93 Ta.27335.1.S1_at BQ620265 - - 1e-2 At4g24250 MLO13 (MILDEW RESISTANCE LOCUS O 13) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.99	100.0	0.90	Ta.9954.1.A1_at	BJ237190	-	-	3e+0	At5g07490	unknown protein	O.I.	H.G.	S.X.
0.49	69.7	0.96	TaAffx.11961.1.S1_at	BJ310417	-	-	7e-2	At1g56500	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.46	66.8	0.96	Ta.13234.1.S1_at	CA707206	-	-	6e+0	At3g51200	auxin-responsive family protein	O.I.	H.G.	S.X.
0.45	65.2	0.97	Ta.12142.1.A1_s_at	BQ171675	-	-	4e-1	At3g10130	SOUL heme-binding family protein	O.I.	H.G.	S.X.
0.42	60.9	0.96	TaAffx.108221.1.S1_at	CD880236	-	-	4e-7	At1g54520	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	0.97	Ta.14695.1.S1_at	CA680229	-	-	1e+0	At1g44414	unknown protein	O.I.	H.G.	S.X.
0.41	59.6	0.97	TaAffx.123205.1.S1_at	CD861867	-	-	3e-6	At1g51110	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.41	59.6	0.96	Ta.22648.1.S1_a_at	CK211825	-	-	7e+0	At3g44140	unknown protein	O.I.	H.G.	S.X.
0.40	58.4	0.97	Ta.5590.1.S1_x_at	CK213247	-	-	1e+0	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	O.I.	H.G.	S.X.
0.39	56.1	0.97	Ta.8219.1.S1_at	CD877084	-	-	2e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.39	56.1	0.98	Ta.12218.1.A1_at	CA731361	-	-	3e+0	At1g30460	CPSF30	O.I.	H.G.	S.X.
0.38	54.7	0.95	TaAffx.58649.1.S1_at	CD884101	-	-	2e-2	At5g35970	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.36	51.9	0.96	Ta.22042.1.S1_at	CA717521	-	-	2e-4	At1g66940	protein kinase-related	O.I.	H.G.	S.X.
0.36	51.9	0.97	Ta.981.1.S1_x_at	CD884037	-	-	3e+0	At1g15980	NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	O.I.	H.G.	S.X.
0.35	49.8	0.96	Ta.881.1.S1_a_at	CK213344	-	-	9e+0	At4g24974	-	O.I.	H.G.	S.X.
0.35	49.8	0.94	Ta.517.1.A1_at	BQ172144	-	-	4e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.
0.34	48.1	0.96	Ta.22455.1.S1_at	CA746040	-	-	1e+1	At5g28615	-	O.I.	H.G.	S.X.
0.33	46.9	0.95	Ta.7722.3.S1_a_at	BE213326	-	-	2e+0	At3g52210	mRNA capping enzyme family protein	O.I.	H.G.	S.X.
0.33	46.9	0.96	Ta.12169.1.S1_at	CD863887	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.
0.31	42.7	0.97	Ta.7769.1.A1_at	BQ171706	-	-	1e-8	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.
0.31	42.7	0.94	Ta.18152.2.S1_at	BQ803082	-	-	2e+0	At4g26965	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.
0.31	42.7	0.98	Ta.13544.1.S1_a_at	CK215541	-	-	8e-3	At5g21430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.30	40.9	0.94	Ta.6706.1.A1_at	BQ170659	-	-	7e+0	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.
0.30	40.9	0.96	Ta.27320.1.S1_s_at	CD454918	-	-	8e-115	At1g50250	FTSH1 (FtsH protease 1)	O.I.	H.G.	S.X.
0.30	40.9	0.96	TaAffx.116357.1.A1_at	BJ275093	-	-	5e-16	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.29	39.2	0.95	Ta.9584.1.S1_at	BJ228075	-	-	4e+0	At1g36240	60S ribosomal protein L30 (RPL30A)	O.I.	H.G.	S.X.
0.29	39.2	0.97	Ta.27320.1.S1_x_at	CD454918	-	-	8e-115	At1g50250	FTSH1 (FtsH protease 1)	O.I.	H.G.	S.X.
0.29	39.2	0.97	TaAffx.30865.1.S1_at	CA621506	-	-	4e+0	At3g17261	unknown protein	O.I.	H.G.	S.X.
0.29	39.2	0.96	Ta.8027.1.S1_x_at	BQ171553	-	-	3e+0	At3g48360	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	O.I.	H.G.	S.X.
0.29	39.2	0.96	Ta.680.1.A1_a_at	BG907029	-	-	1e-1	At3g08010	ATAB2	O.I.	H.G.	S.X.
0.28	39.2	0.96	Ta.680.1.A1_x_at	BG907029	-	-	1e-1	At3g08010	ATAB2	O.I.	H.G.	S.X.
0.27	35.6	0.91	Ta.25734.1.A1_at	CD374098	-	-	5e+0	At3g57190	peptide chain release factor, putative	O.I.	H.G.	S.X.
0.23	29.0	0.98	Ta.1147.1.A1_x_at	BG908398	-	-	3e+0	At5g55720	pectate lyase family protein	O.I.	H.G.	S.X.
0.22	27.1	0.92	Ta.12331.1.A1_s_at	BQ172113	-	-	9e-1	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.
0.18	21.0	0.93	Ta.27335.1.S1_at	BQ620265	-	-	1e-2	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 98.0 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
4.0 96.3 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9 96.1 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3 95.0 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.3 95.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM324486 Si- B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2 94.8 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.9	98.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.0	96.3	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.9	96.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.3	95.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Ta.9954.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g07490: unknown protein (HF=3e+0)
Module size	35 genes
NF	0.34
%ile	54.8

Co-expression analysis

Gene ID Ta.9954.1.A1_at Gene name Homology with ArabidopsisSimilar to At5g07490: unknown protein (HF=3e+0) Module size 35 genes NF 0.34 %ile 54.8

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.9954.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g07490: unknown protein (HF=3e+0)

Module size 35 genes

NF 0.34

%ile 54.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays