CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9793.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g24260: prolyl oligopeptidase family protein (HF=9e-4)

Module size 17 genes

NF 0.41

%ile 66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.8 0.97 Ta.9793.1.A1_at BJ252593 - - 9e-4 At5g24260 prolyl oligopeptidase family protein O.I. H.G. S.X.
0.69 86.9 0.97 Ta.16401.1.A1_s_at BJ215044 - - 2e-7 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative O.I. H.G. S.X.
0.52 73.7 0.97 Ta.7590.2.S1_a_at CK215141 - - 9e-8 At5g27490 integral membrane Yip1 family protein O.I. H.G. S.X.
0.49 69.7 0.98 Ta.4226.1.A1_at CD875106 - - 3e+0 At1g22900 - O.I. H.G. S.X.
0.44 64.5 0.97 Ta.6850.1.S1_at BJ311627 - - 8e-19 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) O.I. H.G. S.X.
0.42 60.9 0.97 Ta.13399.1.S1_at CK195532 - - 1e-14 At2g43070 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.42 60.9 0.97 TaAffx.467.1.S1_at CD911167 - - 2e-7 At3g06190 BPM2 (BTB-POZ AND MATH DOMAIN 2) O.I. H.G. S.X.
0.40 58.4 0.98 Ta.5312.1.S1_x_at CA642442 - - 1e-6 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.39 56.1 0.98 Ta.9301.1.S1_at CK200112 - - 4e-25 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.38 54.7 0.98 Ta.26932.1.S1_at BT009239.1 - - 1e-20 At3g57650 LPAT2 O.I. H.G. S.X.
0.33 46.9 0.98 Ta.9237.2.S1_at CK213290 - - 6e-15 At5g59180 NRPB7 O.I. H.G. S.X.
0.32 44.4 0.97 Ta.9136.1.S1_at CK200225 - - 3e-1 At1g76420 CUC3 (CUP SHAPED COTYLEDON3) O.I. H.G. S.X.
0.32 44.4 0.98 Ta.5527.1.S1_at BT009478.1 - - 9e-8 At3g11240 ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) O.I. H.G. S.X.
0.32 44.4 0.97 Ta.10490.1.S1_at BJ270520 - - 1e-5 At1g28120 - O.I. H.G. S.X.
0.29 39.2 0.98 Ta.19468.1.S1_at BJ290822 - - 3e-6 At5g58020 unknown protein O.I. H.G. S.X.
0.29 39.2 0.98 Ta.23391.1.S1_at BJ220667 - - 4e-25 At4g36760 ATAPP1 O.I. H.G. S.X.
0.29 39.2 0.98 Ta.15839.1.S1_at CA498341 - - 6e+0 At5g29231 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.4 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298081 Leaf tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.0 94.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.0 94.3 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.9 94.0 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.8 93.6 GSM298058 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage