Co-expression analysis

Gene ID	Ta.9791.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g56740: ubiquitin-associated (UBA)/TS-N domain-containing protein (HF=1e+0)
Module size	13 genes
NF	0.74
%ile	95.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.49	69.7	0.89	Ta.9791.1.S1_at	CA651818	-	-	1e+0	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.89	94.6	0.91	Ta.25883.1.A1_x_at	CD454055	-	-	3e-1	At3g15890	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.87	94.2	0.94	Ta.7189.1.S1_s_at	BJ316819	-	-	9e-1	At3g10140	RECA3 (recA homolog 3)	O.I.	H.G.	S.X.	Please select
0.85	93.8	0.92	Ta.25883.1.A1_s_at	CD454055	-	-	3e-1	At3g15890	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.93	Ta.27983.2.S1_at	BJ264288	-	-	3e-2	At4g35780	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.91	Ta.19211.1.A1_at	BJ233137	-	-	9e-1	At5g08150	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.92	Ta.19211.1.A1_x_at	BJ233137	-	-	9e-1	At5g08150	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	Ta.27959.1.S1_at	BJ306449	-	-	1e+0	At3g10140	RECA3 (recA homolog 3)	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.93	Ta.27959.2.S1_at	BJ300624	-	-	5e-9	At3g59110	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.91	Ta.9309.1.A1_x_at	CK157795	-	-	8e-2	At1g72310	ATL3	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.92	Ta.27983.2.S1_a_at	BJ264288	-	-	3e-2	At4g35780	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.93	Ta.19211.2.S1_x_at	CA617359	-	-	2e+0	At2g46860	AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.93	Ta.4878.1.S1_at	AY091512.1	endo-1,4-beta-glucanase	-	5e-3	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.1	99.2	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.1	99.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.8	98.9	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.1	98.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.9	98.0	GSM246395	SB69_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
5.7	97.9	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.7	97.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM246399	SB3_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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