Co-expression analysis

Gene ID	Ta.9666.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g12665: - (HF=3e-1)
Module size	6 genes
NF	0.61
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.9666.3.S1_at	CA630209	-	-	3e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	TaAffx.123194.1.S1_at	CA632952	-	-	8e-2	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.14225.1.S1_x_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.10162.1.S1_at	CD453460	-	-	8e-7	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.14225.1.S1_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.5	98.3	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.3	97.6	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage