Co-expression analysis

Gene ID Ta.9549.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g40570: surfeit locus protein 2 family protein / SURF2 family protein (HF=1e+0)
Module size 6 genes
NF 0.63
%ile 88.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.97Ta.9549.3.S1_x_atBJ229242--1e+0At5g40570surfeit locus protein 2 family protein / SURF2 family proteinO.I.H.G.S.X.
0.6786.30.96Ta.9549.1.S1_x_atCD938416--4e-37At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.S.X.
0.6786.30.98Ta.9549.2.S1_s_atBQ743523--1e+0At5g40570surfeit locus protein 2 family protein / SURF2 family proteinO.I.H.G.S.X.
0.4666.80.98Ta.28770.2.S1_atCA705641--6e-15At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.
0.4464.50.98Ta.3753.1.S1_atBJ247323--2e+1At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.3346.90.97Ta.9201.3.S1_atCA603340--1e-4At1g56110NOP56 (Arabidopsis homolog of nucleolar protein Nop56)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.099.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.198.8GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.798.7GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.298.1GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.797.9GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.397.6GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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