Co-expression analysis

Gene ID	Ta.9488.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g10610: CID12 (HF=1e-3)
Module size	19 genes
NF	0.27
%ile	44.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	0.94	Ta.9488.3.S1_x_at	CA741820	-	-	1e-3	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	TaAffx.83876.3.S1_s_at	CA726646	-	-	4e+0	At3g45070	sulfotransferase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.7540.3.S1_a_at	CK205921	-	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.3049.2.S1_a_at	CA641132	-	-	2e-8	At2g04940	scramblase-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	TaAffx.79627.1.S1_at	CA711626	-	-	1e-2	At4g30097	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.1286.2.S1_x_at	BQ606415	-	-	4e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.5614.2.S1_at	CD903882	-	-	1e+0	At1g48190	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	TaAffx.91476.1.S1_at	BJ316914	-	-	7e-5	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.7044.2.S1_at	CA599368	-	-	4e+0	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	TaAffx.61855.2.S1_x_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.5414.2.S1_at	BJ270088	-	-	6e-24	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	TaAffx.24473.1.S1_s_at	CA718991	-	-	4e+0	At3g18030	ATHAL3A	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.6566.2.S1_at	CA605646	-	-	1e-18	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.7274.3.S1_a_at	AJ612375	-	-	1e-3	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.96	Ta.3614.2.S1_at	CA618561	-	-	1e+0	At3g10890	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.4051.2.S1_at	CA643501	-	-	3e-3	At2g25260	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	TaAffx.61855.2.S1_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.9306.3.S1_a_at	CA642778	-	-	4e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	Ta.9112.1.S1_at	BJ237987	-	-	5e-2	At1g08370	DCP1 (decapping 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.4	92.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.2	91.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage