Co-expression analysis

Gene ID Ta.9488.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At4g10610: CID12 (HF=1e-3)
Module size 19 genes
NF 0.27
%ile 44.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6483.60.94Ta.9488.3.S1_x_atCA741820--1e-3At4g10610CID12O.I.H.G.S.X.
0.3753.00.95TaAffx.83876.3.S1_s_atCA726646--4e+0At3g45070sulfotransferase family proteinO.I.H.G.S.X.
0.3651.90.96Ta.7540.3.S1_a_atCK205921--2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.3244.40.97Ta.3049.2.S1_a_atCA641132--2e-8At2g04940scramblase-relatedO.I.H.G.S.X.
0.3244.40.97TaAffx.79627.1.S1_atCA711626--1e-2At4g30097unknown proteinO.I.H.G.S.X.
0.3142.70.96Ta.1286.2.S1_x_atBQ606415--4e+0At5g61412unknown proteinO.I.H.G.S.X.
0.2633.60.96Ta.5614.2.S1_atCD903882--1e+0At1g48190-O.I.H.G.S.X.
0.2532.10.97TaAffx.91476.1.S1_atBJ316914--7e-5At3g17590BSH (BUSHY GROWTH)O.I.H.G.S.X.
0.2430.30.96Ta.7044.2.S1_atCA599368--4e+0At5g46250RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2430.30.97TaAffx.61855.2.S1_x_atCA614570--4e+0At3g44150unknown proteinO.I.H.G.S.X.
0.2227.10.96Ta.5414.2.S1_atBJ270088--6e-24At5g09740HAM2 (histone acetyltransferase of the MYST family 2)O.I.H.G.S.X.
0.2227.10.96TaAffx.24473.1.S1_s_atCA718991--4e+0At3g18030ATHAL3AO.I.H.G.S.X.
0.2125.50.97Ta.6566.2.S1_atCA605646--1e-18At4g29040RPT2a (regulatory particle AAA-ATPase 2a)O.I.H.G.S.X.
0.2024.00.96Ta.7274.3.S1_a_atAJ612375--1e-3At1g79650RAD23O.I.H.G.S.X.
0.1922.40.96Ta.3614.2.S1_atCA618561--1e+0At3g10890(1-4)-beta-mannan endohydrolase, putativeO.I.H.G.S.X.
0.1821.00.96Ta.4051.2.S1_atCA643501--3e-3At2g25260unknown proteinO.I.H.G.S.X.
0.1719.80.97TaAffx.61855.2.S1_atCA614570--4e+0At3g44150unknown proteinO.I.H.G.S.X.
0.1517.10.97Ta.9306.3.S1_a_atCA642778--4e+0At5g16840BPA1 (BINDINGPARTNEROFACD11 1)O.I.H.G.S.X.
0.1112.40.96Ta.9112.1.S1_atBJ237987--5e-2At1g08370DCP1 (decapping 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.793.3GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.592.5GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.492.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.492.0GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.391.5GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.291.0GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.291.0GSM138144Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO
2.291.0GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.190.3GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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