Co-expression analysis

Gene ID	Ta.9455.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g11890: SEC22 (HF=5e-23)
Module size	6 genes
NF	0.60
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.18139.1.A1_a_at	BJ308447	-	-	4e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.4468.1.S1_at	CK214137	Cop8	-	4e-52	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.12123.1.S1_a_at	BQ171638	-	-	7e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.1582.1.S1_at	CD881313	-	-	3e-25	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.1604.1.S1_at	CK155787	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.8	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2	98.5	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.6	98.3	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.3	98.2	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.1	97.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.3941.1.S1_at, orthologous to the query gene, Ta.9455.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.3941.1.S1_at	At1g11890	-	-	2e-32	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.18367.1.S1_at	At1g11890	-	-	3e-9	At5g03730	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17901.1.S1_at	At1g11890	-	-	7e-23	At3g62700	ATMRP10	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.1424.1.A1_at	At1g11890	hypothetical protein LOC100275815	-	5e+0	At5g43180	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.17497.1.A1_at	At1g11890	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.1417.3.A1_a_at	At1g11890	-	-	8e-2	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.6146.1.A1_at	At1g11890	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.13792.1.S1_at	At1g11890	hypothetical protein LOC100275097	-	2e-5	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.6049.3.A1_a_at	At1g11890	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.2134.1.A1_at	At1g11890	-	-	9e-2	At2g41780	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.18446.1.A1_at	At1g11890	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.17560.1.A1_at	At1g11890	hypothetical protein LOC100277164	-	1e-3	At1g08340	rac GTPase activating protein, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.6049.1.A1_at	At1g11890	-	-	1e-1	At5g02400	PLL2	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6528.1.A1_at	At1g11890	hypothetical protein LOC100277187	-	9e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.14330.1.A1_at	At1g11890	hypothetical protein LOC100279866	-	9e-10	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.7679.1.A1_at	At1g11890	hypothetical protein LOC100273504	-	3e-12	At5g19820	emb2734 (embryo defective 2734)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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