Co-expression analysis

Gene ID Ta.9455.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g11890: SEC22 (HF=5e-23)
Module size 6 genes
NF 0.60
%ile 85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.7188.00.98Ta.18139.1.A1_a_atBJ308447--4e+0At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.6081.00.98Ta.4468.1.S1_atCK214137Cop8-4e-52At5g42970COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)O.I.H.G.S.X.
0.5374.90.98Ta.12123.1.S1_a_atBQ171638--7e-32At5g56280CSN6AO.I.H.G.S.X.
0.4464.50.98Ta.1582.1.S1_atCD881313--3e-25At4g12650-O.I.H.G.S.X.
0.3346.90.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.8GSM139926Anther tetrads rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
7.298.5GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.698.3GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.498.2GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.398.2GSM139930Anther immature pollen rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.098.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.197.5GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.3941.1.S1_at, orthologous to the query gene, Ta.9455.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.1Zm.3941.1.S1_atAt1g11890--2e-32At1g11890SEC22O.I.H.G.S.X.
0.6785.8Zm.18367.1.S1_atAt1g11890--3e-9At5g03730CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)O.I.H.G.S.X.
0.5065.7Zm.17901.1.S1_atAt1g11890--7e-23At3g62700ATMRP10O.I.H.G.S.X.
0.4658.4Zm.1424.1.A1_atAt1g11890hypothetical protein LOC100275815-5e+0At5g43180unknown proteinO.I.H.G.S.X.
0.4455.7Zm.17497.1.A1_atAt1g11890hypothetical protein LOC100273930-3e+0Atmg00140-O.I.H.G.S.X.
0.4149.7Zm.1417.3.A1_a_atAt1g11890--8e-2At4g34960peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.4149.7Zm.6146.1.A1_atAt1g11890brassinosteroid biosynthesis-like protein-1e-40At3g19820DWF1 (DWARF 1)O.I.H.G.S.X.
0.3844.2Zm.13792.1.S1_atAt1g11890hypothetical protein LOC100275097-2e-5At5g19130GPI transamidase component family protein / Gaa1-like family proteinO.I.H.G.S.X.
0.3742.3Zm.6049.3.A1_a_atAt1g11890phosphatidylinositol transporter/ transporter-3e-3At1g76640calmodulin-related protein, putativeO.I.H.G.S.X.
0.3233.4Zm.2134.1.A1_atAt1g11890--9e-2At2g41780unknown proteinO.I.H.G.S.X.
0.3131.6Zm.18446.1.A1_atAt1g11890--3e-2At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.3029.8Zm.17560.1.A1_atAt1g11890hypothetical protein LOC100277164-1e-3At1g08340rac GTPase activating protein, putativeO.I.H.G.S.X.
0.3029.8Zm.6049.1.A1_atAt1g11890--1e-1At5g02400PLL2O.I.H.G.S.X.
0.2928.1Zm.6528.1.A1_atAt1g11890hypothetical protein LOC100277187-9e+0Atmg01350-O.I.H.G.S.X.
0.2419.8Zm.14330.1.A1_atAt1g11890hypothetical protein LOC100279866-9e-10At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.2115.5Zm.7679.1.A1_atAt1g11890hypothetical protein LOC100273504-3e-12At5g19820emb2734 (embryo defective 2734)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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