Co-expression analysis

Gene ID Ta.9455.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g11890: SEC22 (HF=5e-23)
Module size 6 genes
NF 0.60
%ile 85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.98Ta.9455.1.S1_atCK216399--5e-23At1g11890SEC22O.I.H.G.S.X.
0.7188.00.98Ta.18139.1.A1_a_atBJ308447--4e+0At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.6081.00.98Ta.4468.1.S1_atCK214137Cop8-4e-52At5g42970COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)O.I.H.G.S.X.
0.5374.90.98Ta.12123.1.S1_a_atBQ171638--7e-32At5g56280CSN6AO.I.H.G.S.X.
0.4464.50.98Ta.1582.1.S1_atCD881313--3e-25At4g12650-O.I.H.G.S.X.
0.3346.90.98Ta.1604.1.S1_atCK155787--6e-8At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.8GSM139926Anther tetrads rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
7.298.5GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.698.3GSM139927Anther tetrads rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.498.2GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.398.2GSM139930Anther immature pollen rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.098.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.397.6GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
5.197.5GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0791500, orthologous to the query gene, Ta.9455.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.6Os03g0791500At1g11890-Synaptobrevin family protein6e-26At1g11890SEC22O.I.H.G.S.X.
0.4253.9Os03g0243300At1g11890-26S proteasome non-ATPase regulatory subunit 4(26S proteasome regulatory subunit S5A) (Multiubiquitinchain binding protein)1e-8At4g38630RPN10 (REGULATORY PARTICLE NON-ATPASE 10)O.I.H.G.S.X.
0.4051.1Os05g0350600At1g11890-Atranbp1b protein4e-8At1g07140SIRANBPO.I.H.G.S.X.
0.4051.1Os07g0657200At1g11890-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.3846.9Os03g0227000At1g11890-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.3134.5Os05g0556100At1g11890-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.
0.3032.7Os03g0784400At1g11890-Conserved hypothetical protein3e-19At3g22290unknown proteinO.I.H.G.S.X.
0.3032.7Os04g0661900At1g11890--8e-44At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.3032.7Os02g0537900At1g11890-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.2625.6Os05g0564200At1g11890-U2 snRNP auxiliary factor, small subunit2e-22At1g27650ATU2AF35AO.I.H.G.S.X.
0.138.2Os08g0558800At1g11890-60S ribosomal protein L10a-34e-63At5g2244060S ribosomal protein L10A (RPL10aC)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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