Co-expression analysis

Gene ID	Ta.9455.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g11890: SEC22 (HF=5e-23)
Module size	6 genes
NF	0.60
%ile	85.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.9455.1.S1_at	CK216399	-	-	5e-23	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.18139.1.A1_a_at	BJ308447	-	-	4e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.4468.1.S1_at	CK214137	Cop8	-	4e-52	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.12123.1.S1_a_at	BQ171638	-	-	7e-32	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.1582.1.S1_at	CD881313	-	-	3e-25	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.1604.1.S1_at	CK155787	-	-	6e-8	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.8	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
7.2	98.5	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.6	98.3	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4	98.2	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.3	98.2	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.1	97.5	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the barley gene, Contig7111_at, orthologous to the query gene, Ta.9455.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig7111_at	At1g11890	-	-	2e-37	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig4844_s_at	At1g11890	-	-	2e+0	At4g23070	ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.91	98.1	HS08O16u_s_at	At1g11890	-	-	2e+1	At5g62440	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	HVSMEb0004L16r2_at	At1g11890	-	-	1e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig4845_at	At1g11890	-	-	2e-4	At1g68140	-	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig3822_at	At1g11890	-	-	6e-43	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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