Co-expression analysis

Gene ID	Ta.9411.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g16810: unknown protein (HF=2e-4)
Module size	6 genes
NF	0.53
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.9411.3.S1_x_at	CA499635	-	-	2e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	Ta.9411.1.S1_x_at	BQ161375	-	-	5e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.9411.1.S1_a_at	BQ161375	-	-	5e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.9411.2.S1_x_at	CK156676	-	-	1e-4	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.9176.1.S1_at	BJ218541	-	-	7e-47	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.98	Ta.6936.3.S1_x_at	BE445451	-	-	1e-9	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.0	89.7	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5393.3.S1_at, orthologous to the query gene, Ta.9411.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	Gma.5393.3.S1_at	At1g16810	-	-	2e-2	At2g21600	ATRER1B	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.84244.1.S1_at	At1g16810	-	-	1e-11	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.38743.1.S1_at	At1g16810	-	-	4e-4	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.56889.1.S1_s_at	At1g16810	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.4155.2.S1_s_at	At1g16810	EREBP/AP2 transcription factor	-	1e-2	At1g53887	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.87604.1.S1_at	At1g16810	-	-	9e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6941.2.S1_a_at	At1g16810	-	-	2e-4	At3g07950	rhomboid protein-related	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.7528.2.S1_at	At1g16810	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.8102.3.S1_at	At1g16810	-	-	4e-6	At2g26510	PDE135 (pigment defective embryo 135)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.5720.2.S1_a_at	At1g16810	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.29121.1.S1_at	At1g16810	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.77370.1.S1_at	At1g16810	-	-	8e-5	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.92182.1.S1_s_at	At1g16810	-	-	9e-1	At1g69800	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.55210.1.S1_at	At1g16810	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.psHB019xC03f_s_at	At1g16810	-	-	2e-2	At4g16190	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.4037.2.S1_s_at	At1g16810	-	-	1e-16	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.43069.1.S1_at	At1g16810	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.5720.3.S1_s_at	At1g16810	-	-	2e-5	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.59630.1.S1_x_at	At1g16810	-	-	2e-1	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.16259.2.S1_a_at	At1g16810	-	-	2e-29	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.93437.1.S1_s_at	At1g16810	-	-	3e-23	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.8291.1.S1_at	At1g16810	-	-	2e-9	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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