CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9411.3.S1_x_at

Gene name
Homology with Arabidopsis Similar to At1g16810: unknown protein (HF=2e-4)

Module size 6 genes

NF 0.53

%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.98 Ta.9411.3.S1_x_at CA499635 - - 2e-4 At1g16810 unknown protein O.I. H.G. S.X.
0.80 92.2 0.98 Ta.9411.1.S1_x_at BQ161375 - - 5e-4 At1g16810 unknown protein O.I. H.G. S.X.
0.67 86.3 0.99 Ta.9411.1.S1_a_at BQ161375 - - 5e-4 At1g16810 unknown protein O.I. H.G. S.X.
0.67 86.3 0.99 Ta.9411.2.S1_x_at CK156676 - - 1e-4 At1g16810 unknown protein O.I. H.G. S.X.
0.36 51.9 0.98 Ta.9176.1.S1_at BJ218541 - - 7e-47 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.14 15.8 0.98 Ta.6936.3.S1_x_at BE445451 - - 1e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.5 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
2.7 93.3 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
2.5 92.5 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
2.3 91.5 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
2.2 91.0 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM111187 genotype B68 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.0 89.7 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
2.0 89.7 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
2.0 89.7 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g16810, orthologous to the query gene, Ta.9411.3.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g16810 838252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.27 26.2 At4g18593 827592 dual specificity protein phosphatase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.18 11.4 At1g29850 839863 double-stranded DNA-binding family protein F:double-stranded DNA binding, DNA binding;P:biological_process unknown;C:cellular_component unknown;AMOFPB O.I. H.G. S.X.
0.18 11.4 At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. H.G. S.X.
0.15 7.8 At1g10590 837601 DNA-binding protein-related F:nucleic acid binding;P:biological_process unknown;C:plasma membrane;PAO O.I. H.G. S.X.
0.15 7.8 At4g31720 829300 TAFII15 (TBP-ASSOCIATED FACTOR II 15) Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15) O.I. H.G. S.X.
0.10 3.4 At2g38130 818391 ATMAK3 Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. O.I. H.G. S.X.
0.09 2.8 At1g03330 839526 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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