Co-expression analysis

Gene ID	Ta.9408.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g06960: small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative (HF=2e-4)
Module size	9 genes
NF	0.70
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.8	0.97	Ta.9408.1.S1_at	BJ309615	-	-	2e-4	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.97	Ta.9536.1.S1_at	CK208399	-	-	1e-31	At2g27200	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.98	Ta.14404.1.S1_x_at	CD864011	-	-	9e-8	At2g36930	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	TaAffx.133775.1.A1_s_at	BJ307971	-	-	3e-1	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.14538.1.S1_at	BJ318592	-	-	2e-12	At5g49510	PDF3 (PREFOLDIN 3)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.98	Ta.14404.1.S1_a_at	CD864011	-	-	9e-8	At2g36930	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.98	Ta.13801.1.S1_at	BJ242611	-	-	1e-11	At5g57280	methyltransferase	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.14404.3.S1_x_at	CA726331	-	-	9e-9	At2g36930	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.19762.1.A1_s_at	CD900299	-	-	2e+0	At1g16510	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.9	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3	96.7	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage