Co-expression analysis

Gene ID	Ta.9387.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g31510: IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) (HF=9e-23)
Module size	6 genes
NF	0.51
%ile	77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	69.0	0.98	Ta.9387.1.S1_at	BJ251341	-	-	9e-23	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.128.1.S1_at	U76747.1	Tap	-	5e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.9383.1.S1_a_at	BQ483833	-	-	6e-4	At2g37160	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.7089.1.S1_at	CD872336	casein kinase-like protein	-	2e-13	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	TaAffx.20403.1.S1_at	CA684279	-	-	7e-1	At1g36925	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.5661.1.S1_at	BQ802737	-	-	1e-16	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.3	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.1	97.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5	96.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.4	96.8	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0	96.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage