Co-expression analysis

Gene ID	Ta.9385.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=2e-26)
Module size	21 genes
NF	0.75
%ile	95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	0.88	Ta.9385.3.S1_at	BJ316701	-	-	2e-26	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.	Please select
0.84	93.6	0.87	Ta.8970.1.A1_x_at	BQ162706	-	-	5e-2	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select
0.84	93.6	0.87	Ta.22602.2.S1_x_at	CA641674	-	-	1e+0	At3g01420	DOX1	O.I.	H.G.	S.X.	Please select
0.84	93.6	0.89	TaAffx.8019.1.S1_at	CA639677	-	-	7e-2	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.91	TaAffx.95097.1.S1_x_at	CA695080	-	-	1e+0	At2g01554	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	Ta.8483.1.S1_at	BQ161963	-	-	6e+0	At5g26330	plastocyanin-like domain-containing protein / mavicyanin, putative	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.86	Ta.8970.1.A1_s_at	BQ162706	-	-	5e-2	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.90	Ta.3119.1.S1_at	BQ744001	-	-	2e+0	At5g20540	ATBRXL4 (BREVIS RADIX-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.76	90.1	0.89	TaAffx.122315.1.S1_at	CA691698	-	-	3e-1	At1g53760	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	0.87	TaAffx.50046.1.S1_at	CA746057	-	-	7e+0	At5g35360	CAC2	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.89	Ta.25774.1.S1_at	CD373859	-	-	5e+0	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.72	88.3	0.87	TaAffx.55592.2.A1_at	CA735444	-	-	1e-1	At5g45760	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.88	Ta.8292.1.A1_at	BQ161703	-	-	7e-5	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.89	TaAffx.80179.1.S1_at	CA700373	-	-	1e+0	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.89	Ta.5155.1.S1_at	CA638908	-	-	6e+0	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.86	TaAffx.121334.1.S1_at	BG904284	-	-	1e-1	At4g21640	subtilase family protein	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.84	TaAffx.9160.1.S1_at	CA604803	-	-	2e-1	At3g28899	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.87	TaAffx.64649.1.S1_at	BJ278430	-	-	4e+0	At1g64230	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.88	Ta.26151.1.A1_at	CA604082	-	-	5e-1	At1g73470	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.1	0.90	Ta.9423.1.A1_at	CK193717	-	-	5e+0	At5g53040	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.87	TaAffx.105621.1.S1_at	CA731813	-	-	4e+0	At5g58782	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
36.2	99.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.8	99.4	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
10.5	99.2	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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