Co-expression analysis

Gene ID	Ta.9365.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g46030: HTB11 (HF=6e-1)
Module size	18 genes
NF	0.40
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.91	Ta.9365.2.S1_at	BJ301402	-	-	6e-1	At3g46030	HTB11	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.94	TaAffx.52342.1.S1_at	CA708970	-	-	4e+0	At3g58700	60S ribosomal protein L11 (RPL11B)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.91	TaAffx.37213.1.S1_at	BJ292767	-	-	4e+0	At5g44565	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.91	TaAffx.114538.1.S1_at	CA726369	-	-	4e-14	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.118904.1.S1_at	BJ302994	-	-	1e+0	At1g19120	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.87107.1.S1_at	CA595630	-	-	1e+0	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.91	TaAffx.37442.1.S1_at	CA611084	-	-	4e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	TaAffx.37698.1.S1_at	BJ268627	-	-	2e+0	At4g30760	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	TaAffx.29005.1.S1_at	CA652677	-	-	6e-2	At5g37530	thiF family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.92	Ta.6361.2.S1_at	BJ302919	-	-	7e-9	At2g29190	APUM2 (Arabidopsis Pumilio 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.64590.1.S1_at	BJ288251	-	-	3e-4	At4g21500	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.95	TaAffx.113995.1.S1_at	CA600267	-	-	3e-1	At4g14713	PPD1 (PEAPOD 1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.94	TaAffx.89901.2.S1_at	BJ300957	-	-	3e-7	At1g69420	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.22929.2.S1_at	BQ800794	-	-	7e-9	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.7561.3.S1_a_at	CA619967	-	-	2e-17	At4g02060	PRL (PROLIFERA)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.94	Ta.12761.3.S1_at	BJ314346	-	-	7e-2	At3g50690	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.93	TaAffx.52801.1.S1_at	CA720209	-	-	3e-1	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.94	TaAffx.114204.1.S1_at	CA596857	-	-	2e-8	At5g63630	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.3	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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