Co-expression analysis

Gene ID	Ta.9344.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g27440: GUT2 (HF=1e-12)
Module size	6 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.97	Ta.9344.1.S1_at	CD917189	-	-	1e-12	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	Ta.1839.1.S1_x_at	CA603626	fasciclin-like protein FLA26	-	2e-4	At2g35860	FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.96	Ta.1839.1.S1_at	CA603626	fasciclin-like protein FLA26	-	2e-4	At2g35860	FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	Ta.11921.1.S1_at	CA722130	-	-	6e-1	At2g45380	-	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.4447.2.S1_x_at	CA607764	-	-	2e-25	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.9440.1.S1_at	BJ283686	-	-	8e+0	At4g27900	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.8	99.8	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
6.5	98.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the grape gene, 1617755_at, orthologous to the query gene, Ta.9344.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	1617755_at	At1g27440	-	-	2e-33	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select
0.50	72.7	1615467_at	At1g27440	hypothetical protein LOC100245445	-	1e-13	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1613305_at	At1g27440	hypothetical protein LOC100252982	-	9e-24	At5g06390	FLA17 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1620298_at	At1g27440	hypothetical protein LOC100253937	-	1e-18	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1615121_at	At1g27440	hypothetical protein LOC100253823	-	1e-9	At3g57780	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	1619954_at	At1g27440	hypothetical protein LOC100257028	-	7e-16	At5g07830	AtGUS2 (Arabidopsis thaliana glucuronidase 2)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1617573_at	At1g27440	hypothetical protein LOC100266600	-	2e-6	At4g28100	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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