Co-expression analysis

Gene ID	Ta.9334.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g30064: LCR61 (Low-molecular-weight cysteine-rich 61) (HF=1e+0)
Module size	12 genes
NF	0.38
%ile	60.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.81	Ta.9334.2.S1_at	CA608488	-	-	1e+0	At4g30064	LCR61 (Low-molecular-weight cysteine-rich 61)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.90	Ta.9334.1.S1_x_at	BJ284138	-	-	3e+0	At3g49120	PRXCB (PEROXIDASE CB)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.87	Ta.21013.1.S1_at	CA641421	-	-	9e-2	At1g06475	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.90	Ta.18483.1.S1_at	CA637670	-	-	4e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.85	TaAffx.113693.1.S1_at	CA606929	-	-	3e-1	At2g35795	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.87	TaAffx.69207.1.S1_at	CA645162	-	-	2e-3	At2g34830	WRKY35 (WRKY DNA-binding protein 35)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.92	Ta.9334.1.S1_s_at	BJ284138	-	-	3e+0	At3g49120	PRXCB (PEROXIDASE CB)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.84	TaAffx.29350.1.S1_at	CA644693	-	-	3e-4	At2g12646	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.89	Ta.1579.1.A1_at	BQ904556	-	-	1e+0	At5g53880	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.87	Ta.18807.1.A1_at	CA642371	-	-	8e-2	At3g48460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.90	TaAffx.9094.1.S1_at	CA612679	-	-	2e-1	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.87	Ta.7279.1.S1_at	CK152216	-	-	1e+1	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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