Co-expression analysis

Gene ID Ta.9306.2.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g46870: RNA recognition motif (RRM)-containing protein (HF=6e+0)
Module size 6 genes
NF 0.22
%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.97Ta.9306.2.S1_x_atBE493280--6e+0At5g46870RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3346.90.98Ta.25681.1.S1_atAJ614892--3e-2At2g22145-O.I.H.G.S.X.
0.2227.10.97Ta.1597.1.S1_atBQ161355--2e-5At5g61060HDA05 (HISTONE DEACETYLASE 5)O.I.H.G.S.X.
0.1618.20.97Ta.16668.1.S1_x_atCK212492--2e+0At3g54826-O.I.H.G.S.X.
0.1517.10.98Ta.1709.1.S1_atCK208738--2e-53At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)O.I.H.G.S.X.
0.1112.40.97Ta.1602.2.S1_atCA685259--3e+0At2g24970unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.197.5GSM143523Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.296.6GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM143521Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.094.3GSM143525Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.994.0GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.994.0GSM143511Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.893.6GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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