Co-expression analysis

Gene ID	Ta.9290.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g14455: unknown protein (HF=8e-1)
Module size	6 genes
NF	0.21
%ile	35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.92	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.94	Ta.9290.1.S1_x_at	CD865398	-	-	8e-1	At1g14455	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.9290.3.S1_x_at	CA501890	-	-	9e-2	At5g57790	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.27319.1.S1_at	BT009349.1	-	-	2e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	TaAffx.102859.1.S1_at	CA647205	-	-	3e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	Ta.1058.3.S1_x_at	CN013117	S-adenosylmethionine decarboxylase precursor	-	8e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.0	99.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.9	99.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4	97.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0	89.7	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4194.1.S1_x_at, orthologous to the query gene, Ta.9290.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	Ptp.4194.1.S1_x_at	At1g14455	histone 2	-	2e-49	At2g28720	histone H2B, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.4194.1.S1_at	At1g14455	histone 2	-	2e-49	At2g28720	histone H2B, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.2115.1.S1_at	At1g14455	hypothetical protein	-	5e-28	At2g07340	prefoldin-related KE2 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.3980.1.S1_at	At1g14455	-	-	3e-1	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.66786.1.S1_at	At1g14455	hypothetical protein	-	1e-87	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.159891.1.A1_at	At1g14455	ebs-bah-phd domain-containing protein	-	9e-5	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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