CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9290.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g14455: unknown protein (HF=8e-1)

Module size 6 genes

NF 0.21

%ile 35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.92 Ta.9290.1.S1_at CD865398 - - 8e-1 At1g14455 unknown protein O.I. H.G. S.X.
0.73 89.1 0.94 Ta.9290.1.S1_x_at CD865398 - - 8e-1 At1g14455 unknown protein O.I. H.G. S.X.
0.57 79.2 0.94 Ta.9290.3.S1_x_at CA501890 - - 9e-2 At5g57790 unknown protein O.I. H.G. S.X.
0.18 21.0 0.96 Ta.27319.1.S1_at BT009349.1 - - 2e-57 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) O.I. H.G. S.X.
0.17 19.8 0.96 TaAffx.102859.1.S1_at CA647205 - - 3e-1 At5g40250 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 5.8 0.96 Ta.1058.3.S1_x_at CN013117 S-adenosylmethionine decarboxylase precursor - 8e-5 At3g02470 SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.0 99.3 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.0 99.3 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.9 99.3 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3 98.8 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5 98.3 GSM343686 Wheat var. Kennedy_Fp inoculated_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2 98.1 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4 97.7 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0 89.7 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os03g0345700, orthologous to the query gene, Ta.9290.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os03g0345700 At1g14455 - Hypothetical protein 3e-3 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.22 19.4 Os03g0638800 At1g14455 - Protein kinase domain containing protein 2e-32 At3g22750 protein kinase, putative O.I. H.G. S.X.
0.16 11.3 Os06g0171900 At1g14455 - GAMYB-binding protein (Fragment) 3e-10 At1g55680 WD-40 repeat family protein O.I. H.G. S.X.
0.15 10.3 Os01g0833100 At1g14455 - NLI interacting factor domain containing protein 8e-7 At3g55960 NLI interacting factor (NIF) family protein O.I. H.G. S.X.
0.09 4.9 Os05g0409300 At1g14455 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.07 3.7 Os05g0562200 At1g14455 - Drought induced 19 family protein 8e-1 At2g37860 LCD1 (LOWER CELL DENSITY 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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