Co-expression analysis

Gene ID	Ta.9290.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g14455: unknown protein (HF=8e-1)
Module size	6 genes
NF	0.21
%ile	35.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.92	Ta.9290.1.S1_at	CD865398	-	-	8e-1	At1g14455	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.94	Ta.9290.1.S1_x_at	CD865398	-	-	8e-1	At1g14455	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.9290.3.S1_x_at	CA501890	-	-	9e-2	At5g57790	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.27319.1.S1_at	BT009349.1	-	-	2e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	TaAffx.102859.1.S1_at	CA647205	-	-	3e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	Ta.1058.3.S1_x_at	CN013117	S-adenosylmethionine decarboxylase precursor	-	8e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.3	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
11.0	99.3	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.9	99.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4	97.7	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.0	89.7	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig4477_at, orthologous to the query gene, Ta.9290.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig4477_at	At1g14455	-	-	4e-2	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig17523_at	At1g14455	-	-	7e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig9703_at	At1g14455	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig6733_at	At1g14455	-	-	6e-2	At3g44720	ADT4 (arogenate dehydratase 4)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig272_s_at	At1g14455	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	HW01F06u_at	At1g14455	-	-	3e+0	At5g58360	ATOFP3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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