Co-expression analysis

Gene ID	Ta.9251.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g00810: 60S acidic ribosomal protein P1 (RPP1B) (HF=3e-2)
Module size	6 genes
NF	0.34
%ile	55.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.83	Ta.9251.2.A1_at	CA606965	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.88	Ta.9251.2.A1_x_at	CA606965	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.88	Ta.12715.1.S1_s_at	BM134770	-	-	3e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.88	Ta.9251.1.S1_x_at	BQ162667	-	-	9e+0	At3g25719	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.84	Ta.7046.2.A1_at	BJ253526	-	-	8e-1	At4g39540	shikimate kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.85	Ta.20361.1.A1_at	BJ282460	-	-	7e-1	At1g12070	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.8	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.5	97.8	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.6	97.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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