CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.9226.1.S1_at

Gene name Pathogenesis-related protein 4
Homology with Arabidopsis Similar to At5g45890: SAG12 (SENESCENCE-ASSOCIATED GENE 12) (HF=7e+0)

Module size 14 genes

NF 0.73

%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 94.2 0.92 Ta.9226.1.S1_at CD915938 Pathogenesis-related protein 4 - 7e+0 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) O.I. H.G. S.X.
0.85 93.8 0.96 Ta.28.1.S1_at Y18212.1 glucan endo-1,3-beta-D-glucosidase - 6e-1 At3g23360 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.79 91.3 0.95 TaAffx.15327.1.S1_at AJ610775 Glucan endo-1,3-beta-D-glucosidase - 3e+0 At2g22850 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) O.I. H.G. S.X.
0.77 90.8 0.95 Ta.224.1.S1_at AF112966.1 chitinase IV precursor - 1e-1 At3g54420 ATEP3 O.I. H.G. S.X.
0.77 90.8 0.95 TaAffx.108556.1.S1_x_at CA692789 - - 1e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.73 89.1 0.95 TaAffx.108908.2.S1_s_at CA682574 - - 4e+0 At3g25400 - O.I. H.G. S.X.
0.73 89.1 0.95 Ta.30739.2.S1_at CA692019 - - 2e-1 At2g19990 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) O.I. H.G. S.X.
0.73 89.1 0.96 TaAffx.108556.1.S1_at CA692789 - - 2e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.69 86.9 0.95 TaAffx.108908.1.S1_x_at CA684616 - - 1e+0 At2g36450 HRD (HARDY) O.I. H.G. S.X.
0.69 86.9 0.94 Ta.959.1.S1_at CA721939 thaumatin-like protein - 2e+0 At2g27580 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.64 83.6 0.95 Ta.225.1.S1_at AF112967.1 - - 2e-4 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.59 79.8 0.93 TaAffx.116570.1.S1_x_at AL825027 - - 2e-8 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.57 79.2 0.96 Ta.30501.1.S1_at CK205943 - - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.48 69.0 0.95 Ta.22619.1.S1_at CA687670 - - 8e+0 At4g32340 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.4 99.8 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
11.1 99.3 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
10.7 99.2 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7 98.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.4 98.6 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.3 98.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.6 98.3 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.4 98.2 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.1 98.1 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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