Co-expression analysis

Gene ID	Ta.9208.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g28500: 60S acidic ribosomal protein P2 (RPP2C) (HF=1e+0)
Module size	24 genes
NF	0.40
%ile	64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	94.8	0.94	Ta.9208.2.S1_at	CA610100	-	-	1e+0	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.97	Ta.14452.1.S1_at	BJ261752	-	-	3e-11	At5g67590	FRO1 (FROSTBITE1)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.95	TaAffx.110404.1.S1_s_at	CA652341	-	-	2e+1	At5g35890	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.28554.1.S1_at	CD933139	-	-	1e+0	At5g03995	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.2294.2.S1_x_at	CA635438	-	-	5e+0	At1g27380	RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.96	Ta.23817.1.S1_x_at	CK161789	-	-	3e-15	At4g32470	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.5022.1.A1_at	BQ237823	-	-	8e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	Ta.21216.3.S1_a_at	CA659939	-	-	2e-7	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.6109.3.S1_s_at	CK214551	-	-	4e-1	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.2294.3.S1_x_at	CK216495	-	-	1e+0	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.2294.3.S1_at	CK216495	-	-	1e+0	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.6689.3.S1_a_at	CA628277	-	-	1e-3	At3g13930	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.9569.1.S1_x_at	CK213736	-	-	3e-18	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.2311.1.S1_a_at	CK194608	-	-	5e-9	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.12727.2.S1_at	CA606625	-	-	5e-1	At1g65520	ECI1 (DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.6902.2.S1_x_at	CA612967	-	-	4e-1	At4g25330	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.98	Ta.6902.1.S1_x_at	CA641546	-	-	7e+0	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.3169.1.S1_x_at	CD938596	-	-	2e+0	At3g18410	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.9208.1.S1_at	CA679957	-	-	3e-4	At3g04080	ATAPY1 (APYRASE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.5022.2.S1_x_at	CD373560	-	-	5e-2	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.4019.1.S1_at	BJ250474	-	-	5e-14	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.13276.1.S1_at	CD916692	-	-	8e-9	At4g34700	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.304.1.S1_x_at	CK171609	ald protein	-	1e-18	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.95	Ta.1536.1.S1_at	CD866069	-	-	9e-4	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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